Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

30794793 .. 30795220

Gene Structure 428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGGGCACCAAAAGGAACGATATTTGTTGCCTTCTCCCAGTTTCCACCAAAAATATTCCGCAAAGATTGCTTCTACCACTACACTCCAGCAATGAAGATCCCCGAGTCTCTTGAGAATGTTTACTCTTGTGAGAATTGGTTGCCAAGGAGGGTGATGAGTGCGTGGCGTATAGCTGGGATAGTGCATGCATTGGAAGGTTGGAATGAGCATGAATGTGGTTACACCATGTCCAACATTGACAAAGTTTGGCAAGCAACTCTTCGACATGGCTTTCAACCTCTTATCCCCACCACTACTCAAACCAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

105

Amino Acids

12.15

Weight (kDa)

8.88

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	2 - 94	6.1e-51	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	189, 255
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	189, 255
CviAII	CATG	4 cut(s)	188, 212, 229, 269
CviJI	RGCY	2 cut(s)	176, 273
CviKI_1	RGCY	2 cut(s)	176, 273
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	4 cut(s)	191, 215, 232, 272
FaiI	YATR	5 cut(s)	173, 189, 213, 230, 270
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	4 cut(s)	187, 211, 228, 268
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	72
Hin1II	CATG	4 cut(s)	191, 215, 232, 272
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	43, 191
HpyCH4V	TGCA	2 cut(s)	187, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	191, 215, 232, 272
Kzo9I	GATC	1 cut(s)	99
LpnPI	CCDG	3 cut(s)	53, 102, 162
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	2 cut(s)	109, 254
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	182, 258
MnlI	CCTC	2 cut(s)	144, 291
Mph1103I	ATGCAT	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	4 cut(s)	191, 215, 232, 272
NlaIV	GGNNCC	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	3 cut(s)	178, 202, 283
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	61
SspI	AATATT	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	146
TaqI	TCGA	1 cut(s)	265
TasI	AATT	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	110, 228
XceI	RCATGY	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.