Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

22705939 .. 22713620

Gene Structure 7682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0166600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2829 bp

ATGGAGTTTTCAGTGTCCACCCCACGCTATTACTATCCCAATCCCAAACCCACTACTACCACCACCTCCTTTTCTCTCAAACCCCCAAATTCCCAAGCCTCCTCCTCCCCTCTCTCCTCATCTAACCAACTTCGTCGCCCCAAAACCATCACCACTCCTCCTCCTCCTCAGCCCACCAAACCCATCTCCAAAATCCCCTCTAACCCCTTCAAGAACCTCACTAATCCCACCCATGTCCCCACTCCACCGATTATTACCACCACCGATTCTAACACCTCTTCTCTCACTAACAAGCTCTGGCTCACCAGCAAGCTCTCTCCTCCTCCACCGCCACCAGACATAGAAGACGACGGCGACGACGACGACGAAGAAGAAGCAGTCAAGTACAATGAACCCAAAAAGAAATCGCAGCTGCCCAAAGTCGAGTTCCGGCAAGAGGGTAAGGTTTTCGTGGGGAATTTACCCAACTGGCTCAAGAAAAACGAGGTCTCCGAGTTTTTCCGGCAATTCGGACCGATAACGAATGTGATTCTGATCAAGGGCCACGACAGCACTGAGAGAAATGCTGGTTTCGGATTCGTTATATACGGCGGCCCCAATGCGACCAAGTCTGCCATGAAGGCGGTGGAGTTTGACGGCGTGGAGTTCCACGGGAGGGTTCTGACTGTTAAGTTGGACGATGGGGGCAGATTGAAGGACAAAGCTGAGCAGAGGACGCGGTGGATTGAGCAAGACTCCGGCCACGGTGTTGAGTACCGAGCTCGGTCTAAGTGGCATAAAGAGAGGCAGAGCTCTCGCAATGCCTTGCGCAAGGTTATGGAGACGGAGCCGGAGAACTGGCAGGCTGTGGTTCAGACTTTTGAGAAGATTAACAAGCCTTCTAGAGGAGAGTATGGTCTGATGGTCAAGTATTATGCTAGGCGAGGGGACATGCATCGTGCTCGTGAAACATTTGAGAGCATGAGAGCAAGAGGAATAGAGCCGACTTCACATGTATACACAAGCCTGATTCACGCTTATGCAGTTGGCAGAGACATGGAAGAAGCATTATCTTGTGTTAGAAAAATGAAGGACGAGGGCATTGAAATGAGTTTGGTGACTTACAGTATTATTGTTGGGGGATTTGCAAAAGTTGGCAATGCCGAAGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGACATACAACTTTAAATGCAATCATTTATGGGAATATTGTTTATGCTCATTGTCAAGCATGTAATATGGATCGAGCTGAGGCATTGGTACGGGAAATGGAAGAAGCAGGTATAGATGCTCCTATTGACATATATCACACCATGATGGATGGTTACACAATGGTTGGCAATGAAGATAAATGTTTGATTGTGTTTGAGCGACTGAAGGAATGCGGCTTTACACCTTCTGTCATCAGTTATGGATGTCTGATCAATCTTTACATCAAGGTTGGAAAAGTTTCTAAAGCATTGGAAGTCAGCAAAATGATGGAAACAGCCAGCATAAAACATAACATGAAGACGTACTCCATGTTGATCAATGGATTCTTGAAGTTGAAAGACTGGGCTAATGCATTTGCGGTTATAGAAGATTTGATGAAGGATGGTTTGAAGCCCGATGTAGTCCTGTATAATAACATTATAACAGCATTTTGTGGAATGGGTAACATGAATCGCGCTGTTCGCACCGTCAAAGAAATGCAGAGGGAGAGGCATAGACCTACATCACGTACGTTTATGCCGATAATACATGGTTTTGCAAGAGCTGGAGATATGAGAAGAGCCCTAGAGATTTTTGACATGATGAGGATGAGTGGATGCATTCCAACTGTCCATACTTTCAATGCTCTAGTTCTTGGTCTTGTGGAGAAGCGGCAGATGGAGAAGGCTGTTGAAATATTGGATGAGATGACACTTGCAGGCATTAGTCCAAATGAACACACATACACAACTATCATGAATGGTTATGCATCTTTAGGTGATACTGGGAAAGCTTTCGAGTATTTTTCCAAATTGAGGAATGATGGCCTAGAGATTGATGTTTTCACATATGAGGCATTGCTGAAGGCATGTTGCAAAGCAGGCAAAATGCAGAGTGCTTTAGCTGTCACCAAGGAAATGAGTGCTCAAAAAATTCCAAGGAACACCTTCGTGTACAACATATTAGTTGATGGATGGGCTCGAAGGGGTGATGTTTGGGAGGCTGCTGACTTGATGCAGCAAATGAAACGGGAAGGGGTTCAACCTGATATCCACTCCTACACGTCTTTCATAAATGCTTGTTGCAAGGCCGGAGACATGCAGAGAGCTGCAAAAACAATTGAAGAAATGAAAACTTTTGGAGTGAAGCCAAATGTTAAAACTTATACCACATTGATACATGGTTGGGCGCGTGCTTCTCTACCGGAGAAGGCTTTGAGATGCTTCAAAGATATGAAGTTGGCTGGATTGAAGCCAGACAAAGCTGTGTACCATTGCTTGATGACATCACTGTTGTCAAGGGCTACTGTTGCTGAAGCTTACATTTATTCTGGTCTTCTGTCTATCTGCAAGGAGATGATAGAATCTGGATTGACTGTGGATATGGGAACTGCAGTTCACTGGTCGAGGTGCTTACGCAAAATTGAAAGAACAGGTGGTGAGCTTACCGAAGCCCTGCAGAAGACCTTCCCTCCTGATTGGAACTCTTGTCATACTTTGTACGTTAGTTCGGACGTAGACAGTGATGATGAAGTTGACATTACTAGTGATGGTGATGATGATGACATGGAGTTTGCTAGTAGAATAGATAACGTTATGATGACTGATGAGGATAGTCTAAAGCACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

942

Amino Acids

106.06

Weight (kDa)

7.09

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	149 - 221	2.2e-11	RNA recognition motif
PPR_2	PF13041	300 - 341	2.6e-08	PPR repeat family
TPR_24	PF23276	306 - 420	7.8e-08	Fungal tetratrico peptide repeats
PPR_long	PF17177	311 - 384	3.4e-07	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	332 - 361	6e-06	PPR repeat
PPR_2	PF13041	332 - 377	1.3e-09	PPR repeat family
PPR_3	PF13812	333 - 375	9.7e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	422 - 480	2.6e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	457 - 565	4.7e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	468 - 517	4.3e-10	PPR repeat family
PPR_3	PF13812	527 - 582	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	534 - 567	9e-08	PPR repeat
PPR_2	PF13041	538 - 587	5.7e-11	PPR repeat family
TPR_24	PF23276	575 - 670	2.8e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	577 - 620	1.8e-08	PPR repeat family
PPR_3	PF13812	577 - 617	5.4e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	592 - 698	1.4e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	608 - 656	8.3e-14	PPR repeat family
PPR_2	PF13041	647 - 692	1.1e-10	PPR repeat family
PPR_3	PF13812	669 - 722	7.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	674 - 707	9.9e-07	PPR repeat
PPR_2	PF13041	679 - 726	1e-09	PPR repeat family
PPR_long	PF17177	690 - 828	1.9e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	714 - 762	2.1e-14	PPR repeat family
PPR_3	PF13812	737 - 788	2.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	745 - 777	1.6e-07	PPR repeat
PPR_2	PF13041	748 - 796	4.1e-15	PPR repeat family
PPR	PF01535	752 - 781	2.8e-06	PPR repeat
PPR_3	PF13812	775 - 827	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	780 - 812	2.1e-06	PPR repeat
PPR_2	PF13041	787 - 830	4.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1640
Acc16I	TGCGCA	1 cut(s)	809
Acc36I	ACCTGC	1 cut(s)	1277
AccI	GTMKAC	2 cut(s)	996, 2715
AccII	CGCG	3 cut(s)	718, 1674, 2389
AciI	CCGC	7 cut(s)	329, 591, 623, 718, 1392, 1577, 1870
AclI	AACGTT	1 cut(s)	2790
AclWI	GGATC	1 cut(s)	1257
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	3 cut(s)	88, 457, 2130
AcuI	CTGAAG	3 cut(s)	1403, 2081, 2532
AfaI	GTAC	8 cut(s)	386, 755, 1269, 1523, 1729, 2153, 2468, 2699
AfiI	CCNNNNNNNGG	4 cut(s)	436, 655, 884, 2013
AflIII	ACRYGT	2 cut(s)	991, 2259
AhlI	ACTAGT	1 cut(s)	2741
AjiI	CACGTC	1 cut(s)	2262
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AleI	CACNNNNGTG	1 cut(s)	2147
AloI	GAACNNNNNNTCC	2 cut(s)	2577, 2609
Alw21I	GWGCWC	4 cut(s)	763, 794, 943, 2125
Alw26I	GTCTC	5 cut(s)	493, 815, 1026, 1174, 2286
AlwI	GGATC	1 cut(s)	1257
AoxI	GGCC	6 cut(s)	541, 592, 739, 1170, 2023, 2286
ApeKI	GCWGC	6 cut(s)	409, 412, 1148, 2201, 2215, 2306
ApoI	RAATTY	3 cut(s)	88, 457, 2130
ArsI	GACNNNNNNTTYG	2 cut(s)	2753, 2785
Asp700I	GAANNNNTTC	5 cut(s)	1456, 1991, 2144, 2235, 2663
AspLEI	GCGC	3 cut(s)	810, 1676, 2389
AspS9I	GGNCC	3 cut(s)	512, 541, 593
AsuHPI	GGTGA	8 cut(s)	142, 295, 1108, 1988, 2098, 2198, 2648, 2762
AvaII	GGWCC	1 cut(s)	512
BanII	GRGCYC	4 cut(s)	763, 794, 1783, 2179
BauI	CACGAG	1 cut(s)	942
BbsI	GAAGAC	4 cut(s)	351, 1523, 2525, 2666
Bbv12I	GWGCWC	4 cut(s)	763, 794, 943, 2125
BbvCI	CCTCAGC	2 cut(s)	168, 1257
BbvI	GCAGC	6 cut(s)	399, 421, 1135, 2188, 2227, 2293
BceAI	ACGGC	3 cut(s)	367, 604, 652
BcgI	CGANNNNNNTGC	4 cut(s)	776, 810, 923, 957
BclI	TGATCA	3 cut(s)	534, 1428, 1533
BcoDI	GTCTC	5 cut(s)	493, 815, 1026, 1174, 2286
BcuI	ACTAGT	1 cut(s)	2741
BfaI	CTAG	7 cut(s)	882, 918, 1784, 1847, 2027, 2742, 2775
BfmI	CTRYAG	3 cut(s)	1149, 2589, 2654
BfuAI	ACCTGC	1 cut(s)	1277
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	9 cut(s)	410, 413, 592, 1149, 1393, 1871, 2202, 2216, 2307
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	9 cut(s)	411, 414, 593, 1150, 1394, 1872, 2203, 2217, 2308
Bme18I	GGWCC	1 cut(s)	512
BmgBI	CACGTC	1 cut(s)	2262
BmgT120I	GGNCC	3 cut(s)	512, 541, 593
BmiI	GGNNCC	2 cut(s)	595, 828
BmrI	ACTGGG	2 cut(s)	1570, 1992
BmsI	GCATC	6 cut(s)	943, 1285, 1805, 1976, 2202, 2408
BmuI	ACTGGG	2 cut(s)	1570, 1992
BpiI	GAAGAC	4 cut(s)	351, 1523, 2525, 2666
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
BpmI	CTGGAG	1 cut(s)	1785
Bpu10I	CCTNAGC	2 cut(s)	168, 1257
Bpu1102I	GCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	458
BsaAI	YACGTR	1 cut(s)	1727
BsaBI	GATNNNNATC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	4 cut(s)	649, 742, 2109, 2135
BsaWI	WCCGGW	1 cut(s)	2401
BsaXI	ACNNNNNCTCC	8 cut(s)	142, 145, 172, 175, 473, 503, 2653, 2683
Bsc4I	CCNNNNNNNGG	4 cut(s)	436, 655, 884, 2013
Bse1I	ACTGG	6 cut(s)	473, 842, 1163, 1565, 1987, 2603
Bse3DI	GCAATG	5 cut(s)	805, 1144, 1354, 2054, 2470
Bse8I	GATNNNNATC	1 cut(s)	533
BseDI	CCNNGG	4 cut(s)	649, 742, 2109, 2135
BseGI	GGATG	7 cut(s)	1333, 1427, 1606, 1812, 1820, 1906, 2177
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	4 cut(s)	436, 655, 884, 2013
BseMI	GCAATG	5 cut(s)	805, 1144, 1354, 2054, 2470
BseMII	CTCAG	4 cut(s)	182, 546, 696, 1248
BseNI	ACTGG	6 cut(s)	473, 842, 1163, 1565, 1987, 2603
BseXI	GCAGC	6 cut(s)	399, 421, 1135, 2188, 2227, 2293
Bsh1236I	CGCG	3 cut(s)	718, 1674, 2389
BshFI	GGCC	6 cut(s)	543, 594, 741, 1172, 2025, 2288
BsiHKAI	GWGCWC	4 cut(s)	763, 794, 943, 2125
BsiSI	CCGG	6 cut(s)	430, 502, 738, 830, 2289, 2402
BsiWI	CGTACG	1 cut(s)	1727
BslFI	GGGAC	2 cut(s)	221, 941
BslI	CCNNNNNNNGG	4 cut(s)	436, 655, 884, 2013
BsmAI	GTCTC	5 cut(s)	493, 815, 1026, 1174, 2286
BsmBI	CGTCTC	1 cut(s)	815
BsmFI	GGGAC	2 cut(s)	221, 941
BsmI	GAATGC	2 cut(s)	1394, 1818
BsnI	GGCC	6 cut(s)	543, 594, 741, 1172, 2025, 2288
Bso31I	GGTCTC	1 cut(s)	493
Bsp1286I	GDGCHC	6 cut(s)	763, 794, 943, 1783, 2125, 2179
Bsp1407I	TGTACA	1 cut(s)	2151
Bsp143I	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
Bsp1720I	GCTNAGC	1 cut(s)	705
BspACI	CCGC	7 cut(s)	329, 591, 623, 718, 1392, 1577, 1870
BspANI	GGCC	6 cut(s)	543, 594, 741, 1172, 2025, 2288
BspCNI	CTCAG	4 cut(s)	181, 547, 697, 1249
BspFNI	CGCG	3 cut(s)	718, 1674, 2389
BspHI	TCATGA	1 cut(s)	1953
BspLI	GGNNCC	2 cut(s)	595, 828
BspMAI	CTGCAG	3 cut(s)	1153, 2593, 2658
BspMI	ACCTGC	1 cut(s)	1277
BspPI	GGATC	1 cut(s)	1257
BspQI	GCTCTTC	1 cut(s)	1771
BspTNI	GGTCTC	1 cut(s)	493
BsrDI	GCAATG	5 cut(s)	805, 1144, 1354, 2054, 2470
BsrGI	TGTACA	1 cut(s)	2151
BsrI	ACTGG	6 cut(s)	473, 842, 1163, 1565, 1987, 2603
BssECI	CCNNGG	4 cut(s)	649, 742, 2109, 2135
BssMI	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
BssNAI	GTATAC	1 cut(s)	997
BssSI	CACGAG	1 cut(s)	942
BssT1I	CCWWGG	2 cut(s)	2109, 2135
Bst1107I	GTATAC	1 cut(s)	997
Bst2BI	CACGAG	1 cut(s)	942
Bst4CI	ACNGT	9 cut(s)	667, 746, 1106, 1687, 1828, 2490, 2506, 2575, 2720
Bst6I	CTCTTC	2 cut(s)	283, 1771
BstAUI	TGTACA	1 cut(s)	2151
BstBAI	YACGTR	1 cut(s)	1727
BstC8I	GCNNGC	6 cut(s)	311, 843, 1498, 1918, 2080, 2391
BstDEI	CTNAG	5 cut(s)	168, 555, 705, 768, 1257
BstDSI	CCRYGG	2 cut(s)	649, 742
BstENI	CCTNNNNNAGG	1 cut(s)	882
BstF5I	GGATG	7 cut(s)	1333, 1427, 1606, 1812, 1820, 1906, 2177
BstFNI	CGCG	3 cut(s)	718, 1674, 2389
BstHHI	GCGC	3 cut(s)	810, 1676, 2389
BstKTI	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
BstMAI	GTCTC	5 cut(s)	493, 815, 1026, 1174, 2286
BstMBI	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
BstMWI	GCNNNNNNNGC	7 cut(s)	549, 620, 715, 1148, 1680, 2079, 2507
BstNSI	RCATGY	5 cut(s)	934, 995, 1242, 2070, 2299
BstSFI	CTRYAG	3 cut(s)	1149, 2589, 2654
BstUI	CGCG	3 cut(s)	718, 1674, 2389
BstV1I	GCAGC	6 cut(s)	399, 421, 1135, 2188, 2227, 2293
BstV2I	GAAGAC	4 cut(s)	351, 1523, 2525, 2666
BstZ17I	GTATAC	1 cut(s)	997
BsuRI	GGCC	6 cut(s)	543, 594, 741, 1172, 2025, 2288
BtgI	CCRYGG	2 cut(s)	649, 742
BtrI	CACGTC	1 cut(s)	2262
BtsCI	GGATG	7 cut(s)	1333, 1427, 1606, 1812, 1820, 1906, 2177
BtsIMutI	CAGTG	6 cut(s)	18, 552, 1156, 2486, 2596, 2725
BveI	ACCTGC	1 cut(s)	1277
Cac8I	GCNNGC	6 cut(s)	311, 843, 1498, 1918, 2080, 2391
CciI	TCATGA	1 cut(s)	1953
CfoI	GCGC	3 cut(s)	810, 1676, 2389
Cfr13I	GGNCC	3 cut(s)	512, 541, 593
CpoI	CGGWCCG	1 cut(s)	512
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	8 cut(s)	385, 754, 1268, 1522, 1728, 2152, 2467, 2698
CspI	CGGWCCG	1 cut(s)	512
CviQI	GTAC	8 cut(s)	385, 754, 1268, 1522, 1728, 2152, 2467, 2698
DdeI	CTNAG	5 cut(s)	168, 555, 705, 768, 1257
DpnI	GATC	5 cut(s)	536, 1155, 1251, 1430, 1535
DpnII	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
DraI	TTTAAA	1 cut(s)	1194
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	2 cut(s)	283, 1771
EarI	CTCTTC	2 cut(s)	283, 1771
Ecl136II	GAGCTC	2 cut(s)	761, 792
Eco130I	CCWWGG	2 cut(s)	2109, 2135
Eco24I	GRGCYC	4 cut(s)	763, 794, 1783, 2179
Eco31I	GGTCTC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	2248
Eco47I	GGWCC	1 cut(s)	512
Eco53kI	GAGCTC	2 cut(s)	761, 792
Eco57I	CTGAAG	3 cut(s)	1403, 2081, 2532
EcoICRI	GAGCTC	2 cut(s)	761, 792
EcoNI	CCTNNNNNAGG	1 cut(s)	882
EcoRV	GATATC	1 cut(s)	2248
EcoT14I	CCWWGG	2 cut(s)	2109, 2135
EcoT22I	ATGCAT	4 cut(s)	936, 1573, 1820, 1969
EcoT38I	GRGCYC	4 cut(s)	763, 794, 1783, 2179
ErhI	CCWWGG	2 cut(s)	2109, 2135
Esp3I	CGTCTC	1 cut(s)	815
FaqI	GGGAC	2 cut(s)	221, 941
FauNDI	CATATG	1 cut(s)	2047
FbaI	TGATCA	3 cut(s)	534, 1428, 1533
FblI	GTMKAC	2 cut(s)	996, 2715
Fnu4HI	GCNGC	9 cut(s)	410, 413, 592, 1149, 1393, 1871, 2202, 2216, 2307
FokI	GGATG	7 cut(s)	1340, 1434, 1613, 1819, 1827, 1913, 2184
FriOI	GRGCYC	4 cut(s)	763, 794, 1783, 2179
Fsp4HI	GCNGC	9 cut(s)	410, 413, 592, 1149, 1393, 1871, 2202, 2216, 2307
FspBI	CTAG	7 cut(s)	882, 918, 1784, 1847, 2027, 2742, 2775
FspI	TGCGCA	1 cut(s)	809
GlaI	GCGC	3 cut(s)	809, 1675, 2388
GluI	GCNGC	9 cut(s)	410, 413, 592, 1149, 1393, 1871, 2202, 2216, 2307
GsuI	CTGGAG	1 cut(s)	1785
HaeIII	GGCC	6 cut(s)	543, 594, 741, 1172, 2025, 2288
HapII	CCGG	6 cut(s)	430, 502, 738, 830, 2289, 2402
HgaI	GACGC	1 cut(s)	724
HhaI	GCGC	3 cut(s)	810, 1676, 2389
Hin6I	GCGC	3 cut(s)	808, 1674, 2387
HinP1I	GCGC	3 cut(s)	808, 1674, 2387
HincII	GTYRAC	1 cut(s)	2734
HindII	GTYRAC	1 cut(s)	2734
HindIII	AAGCTT	2 cut(s)	1989, 2514
HinfI	GANTC	8 cut(s)	266, 529, 576, 734, 1009, 1542, 1669, 2561
HpaII	CCGG	6 cut(s)	430, 502, 738, 830, 2289, 2402
HphI	GGTGA	8 cut(s)	142, 295, 1108, 1988, 2098, 2198, 2648, 2762
Hpy166II	GTNNAC	7 cut(s)	18, 997, 2152, 2467, 2596, 2716, 2734
Hpy188I	TCNGA	9 cut(s)	493, 512, 534, 575, 663, 855, 900, 1428, 2710
Hpy188III	TCNNGA	8 cut(s)	211, 475, 882, 944, 1546, 1954, 2565, 2672
Hpy8I	GTNNAC	7 cut(s)	18, 997, 2152, 2467, 2596, 2716, 2734
Hpy99I	CGWCG	6 cut(s)	138, 353, 359, 362, 365, 368
HpyCH4III	ACNGT	9 cut(s)	667, 746, 1106, 1687, 1828, 2490, 2506, 2575, 2720
HpyCH4IV	ACGT	7 cut(s)	1520, 1726, 1730, 2261, 2700, 2712, 2790
HpyF10VI	GCNNNNNNNGC	7 cut(s)	549, 620, 715, 1148, 1680, 2079, 2507
HpyF3I	CTNAG	5 cut(s)	168, 555, 705, 768, 1257
HpySE526I	ACGT	7 cut(s)	1520, 1726, 1730, 2261, 2700, 2712, 2790
HspAI	GCGC	3 cut(s)	808, 1674, 2387
Ksp22I	TGATCA	3 cut(s)	534, 1428, 1533
Kzo9I	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
LguI	GCTCTTC	1 cut(s)	1771
LmnI	GCTCC	2 cut(s)	826, 1303
Lsp1109I	GCAGC	6 cut(s)	399, 421, 1135, 2188, 2227, 2293
LweI	GCATC	6 cut(s)	943, 1285, 1805, 1976, 2202, 2408
MaeI	CTAG	7 cut(s)	882, 918, 1784, 1847, 2027, 2742, 2775
MaeII	ACGT	7 cut(s)	1520, 1726, 1730, 2261, 2700, 2712, 2790
MaeIII	GTNAC	4 cut(s)	1096, 1331, 1661, 2104
MalI	GATC	5 cut(s)	536, 1155, 1251, 1430, 1535
MboI	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
MfeI	CAATTG	1 cut(s)	2316
MhlI	GDGCHC	6 cut(s)	763, 794, 943, 1783, 2125, 2179
MluCI	AATT	7 cut(s)	88, 457, 506, 2009, 2130, 2316, 2619
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	3 cut(s)	654, 1429, 1847
Mph1103I	ATGCAT	4 cut(s)	936, 1573, 1820, 1969
MroXI	GAANNNNTTC	5 cut(s)	1456, 1991, 2144, 2235, 2663
MseI	TTAA	5 cut(s)	669, 870, 1164, 1193, 2355
MslI	CAYNNNNRTG	4 cut(s)	1017, 1085, 1322, 2147
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	6 cut(s)	430, 502, 738, 830, 2289, 2402
MunI	CAATTG	1 cut(s)	2316
Mva1269I	GAATGC	2 cut(s)	1394, 1818
MvnI	CGCG	3 cut(s)	718, 1674, 2389
MwoI	GCNNNNNNNGC	7 cut(s)	549, 620, 715, 1148, 1680, 2079, 2507
NdeI	CATATG	1 cut(s)	2047
NdeII	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
NlaIV	GGNNCC	2 cut(s)	595, 828
NmuCI	GTSAC	2 cut(s)	1096, 2104
NsbI	TGCGCA	1 cut(s)	809
NsiI	ATGCAT	4 cut(s)	936, 1573, 1820, 1969
NspI	RCATGY	5 cut(s)	934, 995, 1242, 2070, 2299
OliI	CACNNNNGTG	1 cut(s)	2147
PagI	TCATGA	1 cut(s)	1953
PciI	ACATGT	1 cut(s)	991
PciSI	GCTCTTC	1 cut(s)	1771
PcsI	WCGNNNNNNNCGW	5 cut(s)	354, 357, 363, 489, 1736
PctI	GAATGC	2 cut(s)	1394, 1818
PdmI	GAANNNNTTC	5 cut(s)	1456, 1991, 2144, 2235, 2663
PfeI	GAWTC	7 cut(s)	266, 529, 576, 1009, 1542, 1669, 2561
Pfl23II	CGTACG	1 cut(s)	1727
PflFI	GACNNNGTC	1 cut(s)	607
PkrI	GCNGC	9 cut(s)	411, 414, 593, 1150, 1394, 1872, 2203, 2217, 2308
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Ppu21I	YACGTR	1 cut(s)	1727
PscI	ACATGT	1 cut(s)	991
PsiI	TTATAA	1 cut(s)	1640
Psp124BI	GAGCTC	2 cut(s)	763, 794
Psp1406I	AACGTT	1 cut(s)	2790
PspLI	CGTACG	1 cut(s)	1727
PspN4I	GGNNCC	2 cut(s)	595, 828
PspPI	GGNCC	3 cut(s)	512, 541, 593
PstI	CTGCAG	3 cut(s)	1153, 2593, 2658
PsyI	GACNNNGTC	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	8 cut(s)	386, 755, 1269, 1523, 1729, 2153, 2468, 2699
RsaNI	GTAC	8 cut(s)	385, 754, 1268, 1522, 1728, 2152, 2467, 2698
RseI	CAYNNNNRTG	4 cut(s)	1017, 1085, 1322, 2147
Rsr2I	CGGWCCG	1 cut(s)	512
RsrII	CGGWCCG	1 cut(s)	512
SacI	GAGCTC	2 cut(s)	763, 794
SapI	GCTCTTC	1 cut(s)	1771
SaqAI	TTAA	5 cut(s)	669, 870, 1164, 1193, 2355
SatI	GCNGC	9 cut(s)	410, 413, 592, 1149, 1393, 1871, 2202, 2216, 2307
Sau3AI	GATC	5 cut(s)	534, 1153, 1249, 1428, 1533
Sau96I	GGNCC	3 cut(s)	512, 541, 593
SchI	GAGTC	1 cut(s)	728
SduI	GDGCHC	6 cut(s)	763, 794, 943, 1783, 2125, 2179
SfaNI	GCATC	6 cut(s)	943, 1285, 1805, 1976, 2202, 2408
SfcI	CTRYAG	3 cut(s)	1149, 2589, 2654
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	4 cut(s)	1017, 1085, 1322, 2147
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	2741
Sse9I	AATT	7 cut(s)	88, 457, 506, 2009, 2130, 2316, 2619
SsiI	CCGC	7 cut(s)	329, 591, 623, 718, 1392, 1577, 1870
SspI	AATATT	2 cut(s)	1216, 1896
SspMI	CTAG	7 cut(s)	882, 918, 1784, 1847, 2027, 2742, 2775
SstI	GAGCTC	2 cut(s)	763, 794
StyI	CCWWGG	2 cut(s)	2109, 2135
TaaI	ACNGT	9 cut(s)	667, 746, 1106, 1687, 1828, 2490, 2506, 2575, 2720
TaiI	ACGT	7 cut(s)	1523, 1729, 1733, 2264, 2703, 2715, 2793
TaqI	TCGA	5 cut(s)	423, 1252, 1995, 2179, 2603
TaqII	GACCGA	2 cut(s)	529, 753
TasI	AATT	7 cut(s)	88, 457, 506, 2009, 2130, 2316, 2619
TatI	WGTACW	2 cut(s)	384, 2151
TauI	GCSGC	3 cut(s)	594, 1395, 1873
TfiI	GAWTC	7 cut(s)	266, 529, 576, 1009, 1542, 1669, 2561
Tru1I	TTAA	5 cut(s)	669, 870, 1164, 1193, 2355
Tru9I	TTAA	5 cut(s)	669, 870, 1164, 1193, 2355
TscAI	CASTG	6 cut(s)	18, 559, 1163, 2493, 2603, 2725
TseFI	GTSAC	2 cut(s)	1096, 2104
TseI	GCWGC	6 cut(s)	409, 412, 1148, 2201, 2215, 2306
Tsp45I	GTSAC	2 cut(s)	1096, 2104
TspGWI	ACGGA	1 cut(s)	839
TspRI	CASTG	6 cut(s)	18, 559, 1163, 2493, 2603, 2725
Tth111I	GACNNNGTC	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	512
XagI	CCTNNNNNAGG	1 cut(s)	882
XapI	RAATTY	3 cut(s)	88, 457, 2130
XbaI	TCTAGA	1 cut(s)	881
XceI	RCATGY	5 cut(s)	934, 995, 1242, 2070, 2299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmiI	GTMKAC	2 cut(s)	996, 2715
XmnI	GAANNNNTTC	5 cut(s)	1456, 1991, 2144, 2235, 2663
XspI	CTAG	7 cut(s)	882, 918, 1784, 1847, 2027, 2742, 2775
Zsp2I	ATGCAT	4 cut(s)	936, 1573, 1820, 1969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.