Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

5328090 .. 5331875

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1075600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGACTACATTATTATTCGGTGGTGAGGAGCTGAATAGATATGGTGGTCTTTATGTTGACAGGCATCCTCATCTCAAAATCAAGGTTGTGGATGGAAGTAGCTTAGCTGTTGCTGTAATCCTAAACAGCATTCCAAAACGGACAACCCAAGTTGTTCTTAGAGGCAACCTCACAAAGGTTGCTTATGCCATTGCCTATGCTTTGAGCCAGAAGGGTATCCAGGTAAATATATATGTATATGTGTGTGTGTGTGTGTGTTATATTATATATATCAAATTCATATGTCACGGCTCTAGCTCCCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

103

Amino Acids

11.25

Weight (kDa)

9.3

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	31, 102, 107, 297
AluI	AGCT	4 cut(s)	31, 102, 107, 297
ApoI	RAATTY	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	35
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	227
BlpI	GCTNAGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
Bpu1102I	GCTNAGC	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	64, 97
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	129
Bsp1720I	GCTNAGC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	103, 158
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	64, 97
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	64, 97
CviJI	RGCY	6 cut(s)	31, 102, 107, 207, 291, 297
CviKI_1	RGCY	6 cut(s)	31, 102, 107, 207, 291, 297
DdeI	CTNAG	2 cut(s)	103, 158
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	219
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FauNDI	CATATG	1 cut(s)	281
FokI	GGATG	2 cut(s)	51, 104
FspBI	CTAG	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	103, 158
LmnI	GCTCC	2 cut(s)	28, 302
LpnPI	CCDG	4 cut(s)	46, 206, 221, 233
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	284
MluCI	AATT	1 cut(s)	275
MnlI	CCTC	4 cut(s)	19, 78, 155, 179
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	33, 87, 104, 109, 171, 180, 225, 299
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	7 cut(s)	73, 94, 161, 220, 232, 233, 299
Sse9I	AATT	1 cut(s)	275
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	219
TasI	AATT	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.