Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

30766061 .. 30768308

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCCCTCCTGAGGTATTTTCCTATGTTTTCAACAAATTGTTTTCATGACCAAAAGGGTTTGAAATTGAAAATATGTGTTTGGACTTTGGAGTCCGCTAAGAAGTTCTCCCCTGTGTTTGATAAGGTCAAGAAGCTGCAAAGGGACTGTCTTAAGGAACCTTGTGAATCACTGACGGATCTTACAACAGATGAGGGGCTCAATAGTTATGGTGGTATATATGTCCAGAGGAATCCACGGCTGAAAATCAAGGTGGTGGATGGGAGTAGCTTAGCTGTGGCTGTCATCCTTAACAGCATTCCAAGATGCGCTACCCAGGTTCTGCTTATAGGAAACCTCACAAAGGTAGTTACATTACAGCTGGCTGAGTATTTGAAGCTCACCAAATCAGTAAATGCTACAGAGGGTAAGGTGGTTCATGACAAAAGCTATGCTCAAAAGATTTGGTTGGTGGGAGATGGATCCAGTGAAAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

172

Amino Acids

19.18

Weight (kDa)

9.24

Isoelectric Point (pI)

14.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	3 cut(s)	222, 492, 505
AfiI	CCNNNNNNNGG	2 cut(s)	48, 379
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	69, 100, 106, 412
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	7 cut(s)	10, 172, 306, 311, 397, 415, 465
AluI	AGCT	7 cut(s)	10, 172, 306, 311, 397, 415, 465
AlwI	GGATC	3 cut(s)	222, 492, 505
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	172
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	409
AxyI	CCTNAGG	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	290, 488
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	195, 499
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	272, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 379
Bse1I	ACTGG	1 cut(s)	501
Bse21I	CCTNAGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	272, 351
BseGI	GGATG	2 cut(s)	301, 321
BseLI	CCNNNNNNNGG	2 cut(s)	48, 379
BseMII	CTCAG	2 cut(s)	38, 393
BseNI	ACTGG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	48, 379
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	214, 497
Bsp1720I	GCTNAGC	1 cut(s)	307
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	39, 394
BspHI	TCATGA	2 cut(s)	82, 454
BspLI	GGNNCC	2 cut(s)	195, 499
BspPI	GGATC	3 cut(s)	222, 492, 505
BspTI	CTTAAG	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	2 cut(s)	272, 351
BssMI	GATC	2 cut(s)	214, 497
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	4 cut(s)	47, 135, 307, 402
BstDSI	CCRYGG	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	301, 321
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	2 cut(s)	217, 500
BstMBI	GATC	2 cut(s)	214, 497
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	159
BstX2I	RGATCY	2 cut(s)	214, 497
BstYI	RGATCY	2 cut(s)	214, 497
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	301, 321
BtsIMutI	CAGTG	2 cut(s)	206, 508
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	358
CciI	TCATGA	2 cut(s)	82, 454
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	40
CviAII	CATG	2 cut(s)	83, 455
DdeI	CTNAG	4 cut(s)	47, 135, 307, 402
DpnI	GATC	2 cut(s)	216, 499
DpnII	GATC	2 cut(s)	214, 497
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	2 cut(s)	86, 458
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	82, 454
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	2 cut(s)	308, 308
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	173
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	86, 458
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	3 cut(s)	128, 203, 268
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	5 cut(s)	46, 83, 166, 262, 455
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	175
HpyF3I	CTNAG	4 cut(s)	47, 135, 307, 402
Hsp92II	CATG	2 cut(s)	86, 458
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	214, 497
LpnPI	CCDG	6 cut(s)	59, 162, 275, 338, 365, 383
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	216, 499
MboI	GATC	2 cut(s)	214, 497
MflI	RGATCY	2 cut(s)	214, 497
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	73, 101
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	6 cut(s)	42, 53, 223, 258, 383, 433
MseI	TTAA	2 cut(s)	189, 327
MspA1I	CMGCKG	1 cut(s)	397
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	214, 497
NlaIII	CATG	2 cut(s)	86, 458
NlaIV	GGNNCC	2 cut(s)	195, 499
PagI	TCATGA	2 cut(s)	82, 454
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	203, 268
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	195, 499
PspPI	GGNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	2 cut(s)	214, 497
PvuII	CAGCTG	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	189, 327
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	214, 497
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	332
SfcI	CTRYAG	1 cut(s)	435
SmlI	CTYRAG	2 cut(s)	11, 188
SmoI	CTYRAG	2 cut(s)	11, 188
Sse9I	AATT	2 cut(s)	73, 101
SsiI	CCGC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	2 cut(s)	73, 101
TfiI	GAWTC	2 cut(s)	203, 268
Tru1I	TTAA	2 cut(s)	189, 327
Tru9I	TTAA	2 cut(s)	189, 327
TscAI	CASTG	2 cut(s)	213, 508
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	71, 443
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	213, 508
Vha464I	CTTAAG	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.