Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

50282634 .. 50287127

Gene Structure 4494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCCAATCTATGACTACATATATGGTACCATGGACAAGTCTAGTGATACTCTACATGAATCTTCACTCAAGAAAGACGAATCCCCTGATGTGGTTCATCTAACCCATTTAACAACAACCACGTCCATCTACCGACTCCCATTGGCATTTGCTTCATTGGCCTCTAATCCACACACCTCAACATGGTACTTATGGTTGTTGTGGCCAGTAACATTAGGGTCTATGATGCTAACTCGGATATTGGGCCGTTCATTTGTTATTGAGAGACAGCGTTTTGATAAACAAAGACTACAAACTTGGGTTATTCCAAAATACAGTTCGCAGTACTTGCTCTCACGGCAAAATGAAGCTATAAACAGAGAGATTGAGGACGCCATACTTGAAGCTGAGAAAAAGGGTGTCAAAGTTATAAGTTTAGGTCTCTTTAATCAGGGCAAGGGGCTTAATAATTATGGTGAGATATATGTCCAGAGGAATCCACGGCTGAAAATCAAGGTGGTGGATGGGAGTAGCTTAGCTGTAGCTGTCATCCTTAACAGCATTCCAAAAGGCGCTACCCAGGTTCTCCTTACAGGAAACCTCACAAAGGTTGCTCATGCCCTTGCCTTTTCTTTGTGCCAGAGGGATATCCAGGTAGTTACATTACATCAGGCTGAGTATTTGAAGCTCACCAAATCATTGAATGCTACAGAGGGTAAGGTGGTTCATGACAGAAGCTATGCTCAAAAGATTTGGTTGGTAGGAGATGGATCCAGTGAAAAAGATCAGTTGAGCGCACCCAACGGAACAATATTTGTTCCCTTCTCTCAATTCCCGCCAAAAAAGTTGCGAAAAGACTGTTACTATCACTGTACTCCAGCCATGAAGATCCCCAAGTCTCTTGAGAATGTTTACTCTTGTGAGAACTGGTTGCCAAGGAGGGTGATGAGTGCGTGGCGTATAGCTGGGATAGTGCATGCATTGGAAGGTTGGAATGACCATGAGTGTGGTTATACCATGTCCGATATTGACAAAGTTTGGCAAGCTACTCTTCGACATGGCTTTCTGCCACTGATCCCCACCGCTGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

357

Amino Acids

40.4

Weight (kDa)

9.17

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	188 - 350	3.3e-73	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	2 cut(s)	815, 1062
AclWI	GGATC	4 cut(s)	744, 757, 862, 1048
AcoI	YGGCCR	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	4 cut(s)	28, 188, 326, 853
AfiI	CCNNNNNNNGG	3 cut(s)	91, 183, 586
AgsI	TTSAA	3 cut(s)	383, 664, 682
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	2 cut(s)	558, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AluBI	AGCT	9 cut(s)	350, 386, 513, 518, 524, 667, 717, 944, 1025
AluI	AGCT	9 cut(s)	350, 386, 513, 518, 524, 667, 717, 944, 1025
Alw26I	GTCTC	3 cut(s)	259, 425, 882
AlwI	GGATC	4 cut(s)	744, 757, 862, 1048
AoxI	GGCC	3 cut(s)	159, 203, 244
ApeKI	GCWGC	1 cut(s)	1064
Asp718I	GGTACC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	554, 776
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	467, 661, 934
BalI	TGGCCA	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	1051
BccI	CCATC	3 cut(s)	134, 497, 740
BceAI	ACGGC	3 cut(s)	231, 353, 497
BciT130I	CCWGG	2 cut(s)	560, 632
BcoDI	GTCTC	3 cut(s)	259, 425, 882
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	519, 687
BfoI	RGCGCY	1 cut(s)	555
BisI	GCNGC	1 cut(s)	1065
BlpI	GCTNAGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	1066
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	560, 632
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	28, 751
BmrFI	CCNGG	2 cut(s)	560, 632
BmsI	GCATC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	840
Bpu1102I	GCTNAGC	1 cut(s)	514
BpuEI	CTTGAG	2 cut(s)	53, 902
BsaHI	GRCGYC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	30, 479, 558, 914
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 183, 586
Bse1I	ACTGG	3 cut(s)	206, 753, 911
BseBI	CCWGG	2 cut(s)	560, 632
BseDI	CCNNGG	4 cut(s)	30, 479, 558, 914
BseGI	GGATG	2 cut(s)	508, 528
BseLI	CCNNNNNNNGG	3 cut(s)	91, 183, 586
BseMII	CTCAG	2 cut(s)	378, 645
BseNI	ACTGG	3 cut(s)	206, 753, 911
BseXI	GCAGC	1 cut(s)	1051
BseYI	CCCAGC	1 cut(s)	944
BshFI	GGCC	3 cut(s)	161, 205, 246
BshNI	GGYRCC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	91, 183, 586
BsmAI	GTCTC	3 cut(s)	259, 425, 882
BsmI	GAATGC	2 cut(s)	540, 688
BsnI	GGCC	3 cut(s)	161, 205, 246
Bso31I	GGTCTC	1 cut(s)	425
Bsp143I	GATC	4 cut(s)	749, 763, 867, 1053
Bsp1720I	GCTNAGC	1 cut(s)	514
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	2 cut(s)	815, 1062
BspANI	GGCC	3 cut(s)	161, 205, 246
BspCNI	CTCAG	2 cut(s)	379, 646
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	28, 751
BspPI	GGATC	4 cut(s)	744, 757, 862, 1048
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	206, 753, 911
BssECI	CCNNGG	4 cut(s)	30, 479, 558, 914
BssMI	GATC	4 cut(s)	749, 763, 867, 1053
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	30, 914
Bst2UI	CCWGG	2 cut(s)	560, 632
Bst4CI	ACNGT	3 cut(s)	317, 839, 851
Bst6I	CTCTTC	1 cut(s)	1035
BstACI	GRCGYC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	957, 1023
BstDEI	CTNAG	3 cut(s)	387, 514, 654
BstDSI	CCRYGG	2 cut(s)	30, 479
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	508, 528
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	554, 776
BstKTI	GATC	4 cut(s)	752, 766, 870, 1056
BstMAI	GTCTC	3 cut(s)	259, 425, 882
BstMBI	GATC	4 cut(s)	749, 763, 867, 1053
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 328, 337
BstNI	CCWGG	2 cut(s)	560, 632
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	2 cut(s)	558, 630
BstSFI	CTRYAG	2 cut(s)	519, 687
BstV1I	GCAGC	1 cut(s)	1051
BstX2I	RGATCY	2 cut(s)	749, 867
BstXI	CCANNNNNNTGG	1 cut(s)	986
BstYI	RGATCY	2 cut(s)	749, 867
BsuRI	GGCC	3 cut(s)	161, 205, 246
BtgI	CCRYGG	2 cut(s)	30, 479
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	508, 528
BtsIMutI	CAGTG	3 cut(s)	760, 847, 1049
Cac8I	GCNNGC	2 cut(s)	957, 1023
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	2 cut(s)	554, 776
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	4 cut(s)	27, 187, 325, 852
CviQI	GTAC	4 cut(s)	27, 187, 325, 852
DdeI	CTNAG	3 cut(s)	387, 514, 654
DpnI	GATC	4 cut(s)	751, 765, 869, 1055
DpnII	GATC	4 cut(s)	749, 763, 867, 1053
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Eco130I	CCWWGG	2 cut(s)	30, 914
Eco31I	GGTCTC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	628
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	558, 630
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	2 cut(s)	30, 914
EcoT22I	ATGCAT	1 cut(s)	961
ErhI	CCWWGG	2 cut(s)	30, 914
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FauI	CCCGC	1 cut(s)	822
Fnu4HI	GCNGC	1 cut(s)	1065
FokI	GGATG	2 cut(s)	515, 515
Fsp4HI	GCNGC	1 cut(s)	1065
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	553, 775
GluI	GCNGC	1 cut(s)	1065
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	840
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	3 cut(s)	161, 205, 246
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	554, 776
Hin1I	GRCGYC	1 cut(s)	372
Hin6I	GCGC	2 cut(s)	552, 774
HinP1I	GCGC	2 cut(s)	552, 774
HinfI	GANTC	4 cut(s)	59, 80, 135, 475
HphI	GGTGA	3 cut(s)	467, 661, 934
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	2 cut(s)	237, 1003
Hpy188III	TCNNGA	4 cut(s)	70, 469, 707, 881
Hpy8I	GTNNAC	1 cut(s)	892
HpyAV	CCTTC	2 cut(s)	811, 959
HpyCH4III	ACNGT	3 cut(s)	317, 839, 851
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	955, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 328, 337
HpyF3I	CTNAG	3 cut(s)	387, 514, 654
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	372
HspAI	GCGC	2 cut(s)	552, 774
KpnI	GGTACC	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	749, 763, 867, 1053
Lsp1109I	GCAGC	1 cut(s)	1051
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	208, 637, 839
MalI	GATC	4 cut(s)	751, 765, 869, 1055
MboI	GATC	4 cut(s)	749, 763, 867, 1053
MboII	GAAGA	3 cut(s)	54, 877, 1022
MflI	RGATCY	2 cut(s)	749, 867
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	2 cut(s)	448, 809
MluNI	TGGCCA	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	950
MnlI	CCTC	8 cut(s)	172, 187, 361, 465, 590, 615, 685, 912
Mox20I	TGGCCA	1 cut(s)	205
Mph1103I	ATGCAT	1 cut(s)	961
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	5 cut(s)	110, 426, 444, 534, 1072
MslI	CAYNNNNRTG	1 cut(s)	984
Msp20I	TGGCCA	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	1064
MspR9I	CCNGG	2 cut(s)	560, 632
Mva1269I	GAATGC	2 cut(s)	540, 688
MvaI	CCWGG	2 cut(s)	560, 632
MwoI	GCNNNNNNNGC	3 cut(s)	158, 328, 337
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	749, 763, 867, 1053
NlaIV	GGNNCC	2 cut(s)	28, 751
NsiI	ATGCAT	1 cut(s)	961
NspI	RCATGY	1 cut(s)	959
PaeI	GCATGC	1 cut(s)	959
PagI	TCATGA	1 cut(s)	706
PctI	GAATGC	2 cut(s)	540, 688
PfeI	GAWTC	3 cut(s)	59, 80, 475
PkrI	GCNGC	1 cut(s)	1066
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	558, 630
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	558, 630
PspN4I	GGNNCC	2 cut(s)	28, 751
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	749, 867
RsaI	GTAC	4 cut(s)	28, 188, 326, 853
RsaNI	GTAC	4 cut(s)	27, 187, 325, 852
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	5 cut(s)	110, 426, 444, 534, 1072
SatI	GCNGC	1 cut(s)	1065
Sau3AI	GATC	4 cut(s)	749, 763, 867, 1053
Sau96I	GGNCC	1 cut(s)	244
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	560, 632
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	2 cut(s)	519, 687
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	2 cut(s)	68, 881
SmoI	CTYRAG	2 cut(s)	68, 881
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	2 cut(s)	448, 809
SsiI	CCGC	2 cut(s)	815, 1062
SspI	AATATT	1 cut(s)	792
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	558, 630
StyI	CCWWGG	2 cut(s)	30, 914
TaaI	ACNGT	3 cut(s)	317, 839, 851
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	1033
TasI	AATT	2 cut(s)	448, 809
TatI	WGTACW	2 cut(s)	324, 851
TfiI	GAWTC	3 cut(s)	59, 80, 475
Tru1I	TTAA	5 cut(s)	110, 426, 444, 534, 1072
Tru9I	TTAA	5 cut(s)	110, 426, 444, 534, 1072
TscAI	CASTG	3 cut(s)	760, 854, 1056
TseI	GCWGC	1 cut(s)	1064
TspDTI	ATGAA	7 cut(s)	72, 86, 144, 240, 360, 695, 878
TspGWI	ACGGA	1 cut(s)	798
TspRI	CASTG	3 cut(s)	760, 854, 1056
XagI	CCTNNNNNAGG	1 cut(s)	584
XceI	RCATGY	1 cut(s)	959
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.