Rorug01G0166500

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
22684201 .. 22688746
4546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0166500.1

Sequence Viewer

Length: 729 bp
ATGCTTGTAAAACTGTGCCGTGTAACTCCTCAAAGAAGAATCTTTCTCTGTTCTGCCATTAGAGCTTCGAATGCAAGCGCTGCCGCCGAGTCTTCTTCTTCTTCTTCTTCTTCTCCGGGACTCTACTCGGCCAAGCAATTTGAGCTCACAGTTCCCAACATTGACTTGGTTCTCAAGGACGTCCGCCCCTATCTCATCAACTATGGTGGAAACGTCGACGTTGTGTCCGTCAAAGACGGCGTCGTTTCTCTCAAGCTCCAAGGGGCTTGTGGAAGCTGTCCTAGCTCAACAACCACCATGAAAATGGGGATTGAACGAGTGCTTAAAGAAAAGTCTGGAGATGCACTCAAGGATATTCAACAAGTCTTTGATAAAGAAAACAGAGAGACCACAGTTGAGTCATCAACCTATGGAAAGGTTCTCGTCCTAGATGGGGTGATTCAGCTGACAAAAAGGGATGAATGTGTCTATCAAGAAATGATTACTCATCTTCCTCTCTGCCCAATTCCAAACCCCAAGAAGGTTTTGGTTATCGGTGGAGGAGATGGTGGTGTACTGAGGGAAGTGGCTAGTCATTATTCTGTCAAGCAAATAGATATATCTATTGGATATGAGGATCCCAGGGTGACACTCCATGTTGGTGATGGAGTCGCATTTTCAAAGGCTGTTCTAGCAGGAACTTATGATGCAATAATTGTGGACTCTTCTGATCCCATAGGTTTCATTTAA

Protein Analysis

242

Amino Acids

25.96

Weight (kDa)

6.31

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NifU PF01106 55 - 112 3.2e-21 NifU-like domain
Spermine_synth PF01564 154 - 200 2.8e-17 Spermine/spermidine synthase domain
Spermine_synth PF01564 200 - 241 9.1e-09 Spermine/spermidine synthase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 216
AciI CCGC 2 cut(s) 84, 184
AclWI GGATC 3 cut(s) 611, 624, 704
AcoI YGGCCR 1 cut(s) 129
AcyI GRCGYC 2 cut(s) 180, 240
AfaI GTAC 1 cut(s) 555
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 433, 520
AgsI TTSAA 3 cut(s) 314, 359, 660
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 620
AluBI AGCT 6 cut(s) 65, 145, 256, 276, 285, 445
AluI AGCT 6 cut(s) 65, 145, 256, 276, 285, 445
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 3 cut(s) 611, 624, 704
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 448, 637, 653
AsuII TTCGAA 1 cut(s) 68
BamHI GGATCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 67
BccI CCATC 3 cut(s) 425, 539, 638
BceAI ACGGC 2 cut(s) 3, 253
BciT130I CCWGG 1 cut(s) 622
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 4 cut(s) 282, 428, 570, 671
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 2 cut(s) 81, 84
BlsI GCNGC 2 cut(s) 82, 85
Bme1390I CCNGG 2 cut(s) 117, 622
BmeRI GACNNNNNGTC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 2 cut(s) 117, 622
BmsI GCATC 2 cut(s) 331, 676
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 330, 362
BpmI CTGGAG 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 3 cut(s) 158, 236, 332
BpuMI CCSGG 1 cut(s) 117
BsaHI GRCGYC 2 cut(s) 180, 240
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 259, 620, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 520
BseBI CCWGG 1 cut(s) 622
BseDI CCNNGG 3 cut(s) 259, 620, 621
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 2 cut(s) 433, 520
BseMII CTCAG 1 cut(s) 548
BseRI GAGGAG 2 cut(s) 18, 555
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 433, 520
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 616, 709
BspACI CCGC 2 cut(s) 84, 184
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 618
BspPI GGATC 3 cut(s) 611, 624, 704
BspT104I TTCGAA 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 259, 620, 621
BssMI GATC 2 cut(s) 616, 709
BssNI GRCGYC 2 cut(s) 180, 240
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 3 cut(s) 15, 151, 394
Bst6I CTCTTC 1 cut(s) 709
BstACI GRCGYC 2 cut(s) 180, 240
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 619, 712
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 616, 709
BstMWI GCNNNNNNNGC 6 cut(s) 62, 71, 80, 142, 282, 671
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 115, 620
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 616
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 80
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 554
CspCI CAANNNNNGTGG 4 cut(s) 187, 222, 678, 713
CviAII CATG 2 cut(s) 298, 635
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 1 cut(s) 557
DpnI GATC 2 cut(s) 618, 711
DpnII GATC 2 cut(s) 616, 709
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 709
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 709
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 380
Eco47III AGCGCT 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 2 cut(s) 301, 638
FaiI YATR 8 cut(s) 204, 299, 411, 599, 612, 636, 684, 716
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 297, 634
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 81, 84
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 81, 84
FspBI CTAG 4 cut(s) 282, 428, 570, 671
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 81, 84
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 2 cut(s) 180, 240
Hin1II CATG 2 cut(s) 301, 638
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 7 cut(s) 39, 89, 120, 398, 439, 648, 701
HpaII CCGG 1 cut(s) 116
HphI GGTGA 3 cut(s) 448, 637, 653
Hpy166II GTNNAC 3 cut(s) 217, 554, 700
Hpy188I TCNGA 1 cut(s) 709
Hpy188III TCNNGA 2 cut(s) 336, 473
Hpy8I GTNNAC 3 cut(s) 217, 554, 700
Hpy99I CGWCG 3 cut(s) 218, 221, 245
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 3 cut(s) 15, 151, 394
HpyCH4IV ACGT 3 cut(s) 180, 213, 219
HpyCH4V TGCA 3 cut(s) 74, 344, 689
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 71, 80, 142, 282, 671
HpyF3I CTNAG 1 cut(s) 557
HpySE526I ACGT 3 cut(s) 180, 213, 219
Hsp92I GRCGYC 2 cut(s) 180, 240
Hsp92II CATG 2 cut(s) 301, 638
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 616, 709
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 5 cut(s) 129, 321, 607, 634, 660
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 331, 676
MaeI CTAG 4 cut(s) 282, 428, 570, 671
MaeII ACGT 3 cut(s) 180, 213, 219
MaeIII GTNAC 2 cut(s) 22, 625
MalI GATC 2 cut(s) 618, 711
MboI GATC 2 cut(s) 616, 709
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 137, 504, 693
MlyI GAGTC 5 cut(s) 98, 114, 407, 657, 695
MnlI CCTC 5 cut(s) 39, 504, 533, 552, 607
MseI TTAA 2 cut(s) 324, 727
MslI CAYNNNNRTG 2 cut(s) 302, 639
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 117, 622
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 622
MwoI GCNNNNNNNGC 6 cut(s) 62, 71, 80, 142, 282, 671
NciI CCSGG 1 cut(s) 117
NdeII GATC 2 cut(s) 616, 709
NlaIII CATG 2 cut(s) 301, 638
NlaIV GGNNCC 1 cut(s) 618
NmeAIII GCCGAG 2 cut(s) 107, 112
NmuCI GTSAC 1 cut(s) 625
NspV TTCGAA 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 39, 439
PflFI GACNNNGTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 2 cut(s) 82, 85
PleI GAGTC 5 cut(s) 97, 114, 406, 656, 695
PpsI GAGTC 5 cut(s) 97, 114, 406, 656, 695
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 1 cut(s) 618
PsuI RGATCY 1 cut(s) 616
PsyI GACNNNGTC 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 2 cut(s) 302, 639
SacI GAGCTC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 324, 727
SatI GCNGC 2 cut(s) 81, 84
Sau3AI GATC 2 cut(s) 616, 709
SchI GAGTC 5 cut(s) 98, 114, 407, 657, 695
ScrFI CCNGG 2 cut(s) 117, 622
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 2 cut(s) 331, 676
SfuI TTCGAA 1 cut(s) 68
SgrDI CGTCGACG 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 302, 639
SmlI CTYRAG 3 cut(s) 173, 251, 347
SmoI CTYRAG 3 cut(s) 173, 251, 347
Sse9I AATT 3 cut(s) 137, 504, 693
SsiI CCGC 2 cut(s) 84, 184
SspMI CTAG 4 cut(s) 282, 428, 570, 671
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 115, 620
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 3 cut(s) 15, 151, 394
TaiI ACGT 3 cut(s) 183, 216, 222
TaqI TCGA 2 cut(s) 68, 216
TasI AATT 3 cut(s) 137, 504, 693
TatI WGTACW 1 cut(s) 553
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 39, 439
Tru1I TTAA 2 cut(s) 324, 727
Tru9I TTAA 2 cut(s) 324, 727
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 314, 474, 712
TspGWI ACGGA 1 cut(s) 217
Tth111I GACNNNGTC 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 5 cut(s) 163, 266, 301, 523, 641
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 4 cut(s) 282, 428, 570, 671
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.