Rorug01G0080200

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
13037758 .. 13038852
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0080200.1

Sequence Viewer

Length: 1095 bp
ATGGCTTTATGGGTTAGAATTTGTGGTTTGCCTATTAAGTATTTCAAGGATTACACTGTTGCTAAAATTGGCAAGATTTTGGGAGATGTGGTTAAGGTCAATCAGGTTACTATTGGCCAAGCTAGAGGAAAATTTGCTCGAGTATGTGTTGAAGTTGATCTAAGTAAACCATTGCGCCCTTTCGTGGAAGTGGAATCTGTGGCCTACAATGTGGTGTATGAAGGAATTTCCCTTATATGTTTTGAATGTGGATGCTTTGGTCATGCCAAAGATAAGTGCCCTTCTGTGCATATTGAGCCTAATATTCCTACTAAACCTCAGGACTCTTGCATTAACATTGAGGATCAAGTTATGGCCTCTACTGAAAAGGCTGATCTGCAGCATGAGTTGGACACTTCTAAAGTTCAAATTGGTGTTATTAAAGAAGATATGGGACCATGGATGTTGATGAACTACAAGAATAAAAAGAAAATAAGTGATACTGGGAGAGTAAAGAGAAATGATAATAAGGGTTCCAGATTTGCAGTTTCACAAGATGAGGATACAATTACTGAAGGTGAACCTAAGACCATTGATAACAATTTTGCAAAGACATCGACTCCTTGTATAATAAAATTGTGGACAAGTTTCCAAGATAAGAAAAAGAATTTGAATAAGGCTACTTCCACTAAGATTGGTACGTCAACAGTTTTCAATGATTTTGGAGTTGGTAGTTCTACTTCAGGGGCTATGAAAGCTGCTCCTAGAGTTCCAATGCAAGATGTCTCTAACAATATTGTTAGCAGCAATGATTCCAAGTCTGCTATGAAGTATCAAAGGAAGACAAAAGGTACCATATCTTCTATTACTAAACACCAGCCTAATGTTTCCGAAAAACTTTCCTTTGAAAATATTGATGCTAATGTGCTTGGTGATGGAATCTCTGCTATTTTTGGCCATTGTCCTCCAGAGGAGACTCTGATGGATGATGGGAAACACCCTTCCATACACCAAGCTTCTGACTGTTTTGTTGAAAAAACCTTTGCTGATAATAGTATGTTGATTATGGATGATAACCAACCTTCCCAAGTTGGGGAAGGAATGGTTGATGCTTGA

Protein Analysis

364

Amino Acids

40.04

Weight (kDa)

6.66

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 830
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 2 cut(s) 115, 934
AcsI RAATTY 4 cut(s) 18, 131, 225, 646
AcuI CTGAAG 2 cut(s) 573, 705
AfaI GTAC 2 cut(s) 679, 832
AfiI CCNNNNNNNGG 3 cut(s) 184, 1071, 1072
AgsI TTSAA 8 cut(s) 46, 152, 245, 407, 652, 694, 887, 1013
AluBI AGCT 3 cut(s) 122, 737, 995
AluI AGCT 3 cut(s) 122, 737, 995
Alw26I GTCTC 2 cut(s) 769, 947
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 4 cut(s) 115, 201, 354, 934
ApeKI GCWGC 3 cut(s) 379, 737, 783
ApoI RAATTY 4 cut(s) 18, 131, 225, 646
Asp718I GGTACC 1 cut(s) 830
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 2 cut(s) 569, 923
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 434
AxyI CCTNAGG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 281
BalI TGGCCA 2 cut(s) 117, 936
BanI GGYRCC 1 cut(s) 830
BarI GAAGNNNNNNTAC 4 cut(s) 703, 735, 823, 855
BbsI GAAGAC 1 cut(s) 827
BbvI GCAGC 3 cut(s) 391, 724, 795
BccI CCATC 3 cut(s) 908, 955, 962
BcgI CGANNNNNNTGC 2 cut(s) 576, 610
BciVI GTATCC 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 769, 947
BfaI CTAG 2 cut(s) 123, 744
BfmI CTRYAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 535
BisI GCNGC 3 cut(s) 380, 738, 784
BlsI GCNGC 3 cut(s) 381, 739, 785
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 3 cut(s) 435, 514, 832
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 3 cut(s) 242, 886, 1078
BmuI ACTGGG 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 1 cut(s) 930
BsaJI CCNNGG 1 cut(s) 437
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 583, 613
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 1071, 1072
Bse1I ACTGG 1 cut(s) 487
Bse21I CCTNAGG 1 cut(s) 318
Bse3DI GCAATG 2 cut(s) 170, 793
BseDI CCNNGG 1 cut(s) 437
BseGI GGATG 4 cut(s) 257, 447, 970, 1054
BseLI CCNNNNNNNGG 3 cut(s) 184, 1071, 1072
BseMI GCAATG 2 cut(s) 170, 793
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 1 cut(s) 965
BseSI GKGCMC 1 cut(s) 281
BseXI GCAGC 3 cut(s) 391, 724, 795
BshFI GGCC 4 cut(s) 117, 203, 356, 936
BshNI GGYRCC 1 cut(s) 830
BsiHKCI CYCGRG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 3 cut(s) 184, 1071, 1072
BsmAI GTCTC 2 cut(s) 769, 947
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 4 cut(s) 117, 203, 356, 936
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 157, 343, 373
Bsp19I CCATGG 1 cut(s) 437
BspANI GGCC 4 cut(s) 117, 203, 356, 936
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 435, 514, 832
BspMAI CTGCAG 1 cut(s) 381
BspPI GGATC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 830
BsrDI GCAATG 2 cut(s) 170, 793
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 437
BssMI GATC 3 cut(s) 157, 343, 373
BssT1I CCWWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 58, 688, 1004
BstDEI CTNAG 4 cut(s) 161, 318, 564, 669
BstDSI CCRYGG 1 cut(s) 437
BstF5I GGATG 4 cut(s) 257, 447, 970, 1054
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 3 cut(s) 160, 346, 376
BstMAI GTCTC 2 cut(s) 769, 947
BstMBI GATC 3 cut(s) 157, 343, 373
BstMWI GCNNNNNNNGC 2 cut(s) 295, 734
BstSFI CTRYAG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 281
BstV1I GCAGC 3 cut(s) 391, 724, 795
BstV2I GAAGAC 1 cut(s) 827
Bsu36I CCTNAGG 1 cut(s) 318
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 4 cut(s) 117, 203, 356, 936
BtgI CCRYGG 1 cut(s) 437
BtsCI GGATG 4 cut(s) 257, 447, 970, 1054
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 2 cut(s) 678, 831
CspCI CAANNNNNGTGG 2 cut(s) 655, 690
CviAII CATG 3 cut(s) 263, 383, 438
CviQI GTAC 2 cut(s) 678, 831
DdeI CTNAG 4 cut(s) 161, 318, 564, 669
DpnI GATC 3 cut(s) 159, 345, 375
DpnII GATC 3 cut(s) 157, 343, 373
EaeI YGGCCR 2 cut(s) 115, 934
Eco130I CCWWGG 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 573, 705
Eco81I CCTNAGG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 266, 386, 441
FaqI GGGAC 1 cut(s) 447
FatI CATG 3 cut(s) 262, 382, 437
Fnu4HI GCNGC 3 cut(s) 380, 738, 784
FokI GGATG 4 cut(s) 264, 454, 977, 1061
Fsp4HI GCNGC 3 cut(s) 380, 738, 784
FspBI CTAG 2 cut(s) 123, 744
GlaI GCGC 1 cut(s) 176
GluI GCNGC 3 cut(s) 380, 738, 784
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 4 cut(s) 117, 203, 356, 936
HhaI GCGC 1 cut(s) 177
Hin1II CATG 3 cut(s) 266, 386, 441
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 684
HindII GTYRAC 1 cut(s) 684
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 6 cut(s) 194, 323, 598, 791, 918, 955
HphI GGTGA 2 cut(s) 569, 923
Hpy166II GTNNAC 4 cut(s) 167, 560, 621, 684
Hpy188I TCNGA 3 cut(s) 871, 960, 1000
Hpy188III TCNNGA 3 cut(s) 320, 516, 947
Hpy8I GTNNAC 4 cut(s) 167, 560, 621, 684
HpyAV CCTTC 6 cut(s) 215, 291, 548, 990, 1070, 1071
HpyCH4III ACNGT 3 cut(s) 58, 688, 1004
HpyCH4IV ACGT 1 cut(s) 680
HpyCH4V TGCA 6 cut(s) 289, 330, 379, 524, 587, 757
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 734
HpyF3I CTNAG 4 cut(s) 161, 318, 564, 669
HpySE526I ACGT 1 cut(s) 680
Hsp92II CATG 3 cut(s) 266, 386, 441
HspAI GCGC 1 cut(s) 175
KpnI GGTACC 1 cut(s) 834
Kzo9I GATC 3 cut(s) 157, 343, 373
LmnI GCTCC 1 cut(s) 745
LpnPI CCDG 7 cut(s) 89, 305, 468, 529, 708, 869, 960
Lsp1109I GCAGC 3 cut(s) 391, 724, 795
LweI GCATC 3 cut(s) 242, 886, 1078
MaeI CTAG 2 cut(s) 123, 744
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 159, 345, 375
MboI GATC 3 cut(s) 157, 343, 373
MboII GAAGA 3 cut(s) 437, 831, 832
MhlI GDGCHC 1 cut(s) 281
MlsI TGGCCA 2 cut(s) 117, 936
MluCI AATT 9 cut(s) 18, 66, 131, 225, 408, 546, 580, 614, 646
MluNI TGGCCA 2 cut(s) 117, 936
MlyI GAGTC 3 cut(s) 317, 592, 949
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 7 cut(s) 119, 327, 334, 367, 532, 943, 954
Mox20I TGGCCA 2 cut(s) 117, 936
MscI TGGCCA 2 cut(s) 117, 936
MseI TTAA 4 cut(s) 36, 93, 333, 420
Msp20I TGGCCA 2 cut(s) 117, 936
MwoI GCNNNNNNNGC 2 cut(s) 295, 734
NcoI CCATGG 1 cut(s) 437
NdeII GATC 3 cut(s) 157, 343, 373
NlaIII CATG 3 cut(s) 266, 386, 441
NlaIV GGNNCC 3 cut(s) 435, 514, 832
PaeR7I CTCGAG 1 cut(s) 138
PfeI GAWTC 3 cut(s) 194, 791, 918
PkrI GCNGC 3 cut(s) 381, 739, 785
PleI GAGTC 3 cut(s) 317, 592, 949
PpsI GAGTC 3 cut(s) 317, 592, 949
PspN4I GGNNCC 3 cut(s) 435, 514, 832
PspPI GGNCC 1 cut(s) 434
PspXI VCTCGAGB 1 cut(s) 138
PstI CTGCAG 1 cut(s) 381
RsaI GTAC 2 cut(s) 679, 832
RsaNI GTAC 2 cut(s) 678, 831
SaqAI TTAA 4 cut(s) 36, 93, 333, 420
SatI GCNGC 3 cut(s) 380, 738, 784
Sau3AI GATC 3 cut(s) 157, 343, 373
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 3 cut(s) 317, 592, 949
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 3 cut(s) 242, 886, 1078
SfcI CTRYAG 1 cut(s) 377
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 9 cut(s) 18, 66, 131, 225, 408, 546, 580, 614, 646
SspI AATATT 3 cut(s) 304, 775, 892
SspMI CTAG 2 cut(s) 123, 744
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 3 cut(s) 58, 688, 1004
TaiI ACGT 1 cut(s) 683
TaqI TCGA 2 cut(s) 139, 596
TasI AATT 9 cut(s) 18, 66, 131, 225, 408, 546, 580, 614, 646
TfiI GAWTC 3 cut(s) 194, 791, 918
Tru1I TTAA 4 cut(s) 36, 93, 333, 420
Tru9I TTAA 4 cut(s) 36, 93, 333, 420
TscAI CASTG 1 cut(s) 61
TseI GCWGC 3 cut(s) 379, 737, 783
TspDTI ATGAA 4 cut(s) 234, 464, 746, 821
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 4 cut(s) 18, 131, 225, 646
XhoI CTCGAG 1 cut(s) 138
XspI CTAG 2 cut(s) 123, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.