Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

32877471 .. 32882540

Gene Structure 5070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTGGCCAGTCACACTGTGGTCTATGCTGCTCACTTGGATTTACGGCCGAACTTTTGTGATTGAGAGGCAGCACTTTGAGAAACTTAAATTGCAAACTTGGGCTATACCGAAATACAGTTTGCAGTACTTCTTGGAATGGCAAAACGAAGCTATCAACGGCTTGATTGAGGAAGCTATACTTGAAGCTGAGGAAAAGGGTGTCAAAGTTTTAAGTTTAGGTCTCTTGAATCAGGCAAGTCAATCTGTACTAATCCTGATTAGTGAGGAGCTGAATAGATACGGTGGCCTATATGTTCACAGGAATCCACAGCTGAAAATCAAGGTGGTGGATGGAAGTAGCTTAGCTGTGGCTGTCATCCTCAACAGCATTCCGAAAGGGACAACCCAAGTTCTTCTTAGAGGCAACCTCACTAAGGTTGCTTATGCCCTTGCCTTTTCGTTGTGCCGGAGGGGAATCCAGCTTATTTCAGGTAGCTACACTACACACCAGTCTGATTATTTGAAGCTCACCAAATCATTCAATGCCACTGAGAGTATGCTGGTTCTTGCAAAGAGCTGTGCTGCAAAGATCTGGTTAGTGGGAGATGGATTGAGTAAAGAAGAACAATTGAATGCACCAAAAGGAACTATATTTGTTCCCTTCTCCCAAATTCAACCCAAAAAAAATTGCGCAAAGACTGCTACTACCACTGCACTCCAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

235

Amino Acids

26.26

Weight (kDa)

9.37

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	131 - 223	8.9e-22	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	673
AcoI	YGGCCR	2 cut(s)	5, 46
AcsI	RAATTY	1 cut(s)	651
AdeI	CACNNNGTG	1 cut(s)	18
AfaI	GTAC	2 cut(s)	128, 249
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	6 cut(s)	185, 229, 505, 523, 613, 656
Alw26I	GTCTC	1 cut(s)	227
AoxI	GGCC	3 cut(s)	5, 46, 286
ApeKI	GCWGC	3 cut(s)	28, 70, 563
ApoI	RAATTY	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	7
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	15, 82, 550
BccI	CCATC	2 cut(s)	326, 581
BceAI	ACGGC	2 cut(s)	61, 175
BcoDI	GTCTC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	570
BisI	GCNGC	3 cut(s)	29, 71, 564
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	3 cut(s)	30, 72, 565
BmcAI	AGTACT	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	393, 425
BpmI	CTGGAG	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	8, 490
BseGI	GGATG	2 cut(s)	337, 357
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	180, 522
BseNI	ACTGG	2 cut(s)	8, 490
BseRI	GAGGAG	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	15, 82, 550
BsgI	GTGCAG	1 cut(s)	678
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	7, 48, 288
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	2 cut(s)	369, 619
BsnI	GGCC	3 cut(s)	7, 48, 288
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	570
Bsp1720I	GCTNAGC	1 cut(s)	343
BspANI	GGCC	3 cut(s)	7, 48, 288
BspCNI	CTCAG	2 cut(s)	181, 523
BspTNI	GGTCTC	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	8, 490
BssMI	GATC	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	18, 119, 284
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstDEI	CTNAG	5 cut(s)	189, 343, 398, 414, 531
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	337, 357
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	570
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	15, 82, 550
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	7, 48, 288
BtsCI	GGATG	2 cut(s)	337, 357
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	14, 528, 690
CfoI	GCGC	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	127, 248
CviAII	CATG	1 cut(s)	705
CviQI	GTAC	2 cut(s)	127, 248
DdeI	CTNAG	5 cut(s)	189, 343, 398, 414, 531
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	18
EaeI	YGGCCR	2 cut(s)	5, 46
EagI	CGGCCG	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	413
FaeI	CATG	1 cut(s)	708
FaiI	YATR	9 cut(s)	26, 107, 179, 292, 294, 426, 539, 632, 706
FalI	AAGNNNNNCTT	4 cut(s)	165, 197, 381, 413
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	1 cut(s)	704
Fnu4HI	GCNGC	3 cut(s)	29, 71, 564
FokI	GGATG	2 cut(s)	344, 344
Fsp4HI	GCNGC	3 cut(s)	29, 71, 564
FspI	TGCGCA	1 cut(s)	673
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	3 cut(s)	29, 71, 564
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	3 cut(s)	7, 48, 288
HapII	CCGG	1 cut(s)	448
HhaI	GCGC	1 cut(s)	674
Hin1II	CATG	1 cut(s)	708
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HinfI	GANTC	3 cut(s)	229, 304, 456
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	375, 496
Hpy188III	TCNNGA	2 cut(s)	226, 256
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	3 cut(s)	18, 119, 284
HpyCH4V	TGCA	6 cut(s)	94, 124, 551, 566, 617, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	5 cut(s)	189, 343, 398, 414, 531
Hsp92II	CATG	1 cut(s)	708
HspAI	GCGC	1 cut(s)	672
Kzo9I	GATC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	3 cut(s)	15, 82, 550
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MboII	GAAGA	2 cut(s)	386, 614
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	1 cut(s)	570
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	4 cut(s)	89, 608, 651, 667
MluNI	TGGCCA	1 cut(s)	7
MnlI	CCTC	8 cut(s)	60, 163, 184, 259, 371, 395, 419, 444
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	2 cut(s)	87, 212
Msp20I	TGGCCA	1 cut(s)	7
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	448
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	2 cut(s)	369, 619
MwoI	GCNNNNNNNGC	1 cut(s)	680
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	10
NsbI	TGCGCA	1 cut(s)	673
PctI	GAATGC	2 cut(s)	369, 619
PfeI	GAWTC	3 cut(s)	229, 304, 456
PkrI	GCNGC	3 cut(s)	30, 72, 565
PsuI	RGATCY	1 cut(s)	570
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	128, 249
RsaNI	GTAC	2 cut(s)	127, 248
SaqAI	TTAA	2 cut(s)	87, 212
SatI	GCNGC	3 cut(s)	29, 71, 564
Sau3AI	GATC	1 cut(s)	570
ScaI	AGTACT	1 cut(s)	128
Sse9I	AATT	4 cut(s)	89, 608, 651, 667
TaaI	ACNGT	3 cut(s)	18, 119, 284
TasI	AATT	4 cut(s)	89, 608, 651, 667
TatI	WGTACW	2 cut(s)	126, 247
TfiI	GAWTC	3 cut(s)	229, 304, 456
Tru1I	TTAA	2 cut(s)	87, 212
Tru9I	TTAA	2 cut(s)	87, 212
TscAI	CASTG	3 cut(s)	21, 535, 697
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	28, 70, 563
Tsp45I	GTSAC	1 cut(s)	10
TspRI	CASTG	3 cut(s)	21, 535, 697
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	1 cut(s)	651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.