Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

37581476 .. 37815436

Gene Structure 233961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG171200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGGCTTCCACACCTGGAATTCTTACCGACTGGCCATGGACACCTCTTGGTAGCTTTAAGTACGTGGTGTTAGCTCCTTGGGTGATTCACAGCACATACTCATATATGTTTGGAGAAGAAGGCACAGATCTATTTTACATCCTCGTATTTCCATTTCTGTTGTGGAGGATGCTCCACAACCAGATATGGATCTCACTTTCTCGCTATCAAACTGCCAAAGGCAAAGGAACAATCGTGGACAAGGGCCTCGAATTTGAACAAGTCGACAGAGAAAGAGATTGGGATGATCAAATCATATTCAATGGAATCCTATTTTACATAGGCTGGTGCGTCGTGCCTAGGGCTCAAATTACTGACCTACCAATTTGGAGGGGAGATGGGTTGGTCATGACGATGCTGCTTCATGCTGGTCCGGTCGAGTATCTCTACTACTGGTTACACAGAGCACTTCACCACCATTTCCTCTACTCCCGCTACCATTCTCATCACCATTCGTCCATTGTCACTGAGCCAATTACTTCTGTGACTCACCCATTTGCGGAGCACATAACATATTTCATGCTCTTCGCAATACCAATGGTGGCAACTCTGTTGATCGGAACAGCTTCCATCTCATCATATTTTGTTTATATTACTTATATCGACTTCATGAACAACTTGGGACACTGCAATTTCGAGTTCATTCCGAACTGGATCTTCTCTCTTTTTCCTCCTATTAAGTATCTAATATATACTCCCTCGTACCACTCTTTGCATCACACACAATTTCGAACCAATTACTCCCTCTTCATGCCAGTCTATGACTATATATATGGTACCATGGACAAGTCTAGTGATACCCTACATGAATCGTCACTCAGGAAAGAGGAATCACCTGATGTGGTTCATCTAACCCATTTAACAACAACTAAATCCATCTACCGACTCCCACTGGCATTTGCTTCCTTGGCCTCTAATCCACACACTTCAACATGGTACTTATGGTTGTTGTGGCCGGTGACATTATGGTCCTTGATGCTAACTTGGATACTTGGCCGTTCATTTGTTATTGAGAGGCAGCGTTTTGATAAACACAGACTACAAACTTGGGTTATTCCAAAATATAGTTTGCAGTACTTGCTCTCATGGCAAAATGAAGCTACAAACAGAGCGATTGAGGATGCCATACTTGAAGCTGAGCAAATGGGTGTCAAAGTTATAAGTTTAGGTCTCTTTAATCAGGGTGAGGGGCTCAATAATTATGGTGGTATATATGTCCAGAGGAATCCACGGCTGAAAGTCAAGGTGGTGGATGGGAGTAGCTTGGCTGTGGCCGTCATCCTTAACAGCATTCCGAAAGGGACAACCCAGGTTCTCCTTACAGGCAACCTCACAAAGGTTGCTTATGCCCTTGCCTTTTCTTTGTGCCAAAGAGATATCCAGGTAGTTACATTACAGCAGGCTGAGTATTTGAAGCTCACCAAATCATTAAATGCTACAGAGGGTAAGGTGGTTCATGACAGAAGCTATGCTCAAAAGATTTGGTTGGTGGGAGATGGGTTGAGTAAAAAAGAACAGTTGAGTGCACCAAAAGGAACAATTTTTGTTCCCTTCTCTCAATTTCCACCAAAACAGTTGCGCAGAGACTGCCTCTACCACTACACACCAGCAATGAAGATCCCCAAGTCTCTTGAGAATGTTTACTCTTGTGAGAACTGGTTGCCAAGGAGGGTGATGAGTGCGTGGCGTATAGCAGGAATAGTGCATGCATTGGAAGGTTGGAATGAGCACGAGTGTGGTTACACCATGTCCAGCATTGACAAAGTTTGGCAAGCAACTCTTCGACATGGCTTTCAGCCTCTAGTCTCCAAAGAGGCAAAGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

622

Amino Acids

71.99

Weight (kDa)

8.46

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	137 - 273	1.4e-20	Fatty acid hydroxylase
CER1-like_C	PF12076	451 - 613	6e-74	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1199
AasI	GACNNNNNNGTC	1 cut(s)	1006
Acc16I	TGCGCA	1 cut(s)	1619
Acc65I	GGTACC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	2 cut(s)	472, 539
AclWI	GGATC	3 cut(s)	197, 701, 1651
AcoI	YGGCCR	4 cut(s)	32, 992, 1033, 1311
AcsI	RAATTY	2 cut(s)	18, 251
AfaI	GTAC	5 cut(s)	62, 743, 817, 977, 1115
AfiI	CCNNNNNNNGG	2 cut(s)	538, 1375
AgsI	TTSAA	5 cut(s)	257, 301, 969, 1172, 1453
AjnI	CCWGG	3 cut(s)	13, 1347, 1419
AleI	CACNNNNGTG	1 cut(s)	1773
AluBI	AGCT	8 cut(s)	54, 74, 605, 1139, 1175, 1302, 1456, 1506
AluI	AGCT	8 cut(s)	54, 74, 605, 1139, 1175, 1302, 1456, 1506
Alw21I	GWGCWC	4 cut(s)	448, 546, 1567, 1770
Alw26I	GTCTC	4 cut(s)	1214, 1617, 1671, 1849
Alw44I	GTGCAC	1 cut(s)	1563
AlwI	GGATC	3 cut(s)	197, 701, 1651
AlwNI	CAGNNNCTG	1 cut(s)	1626
AoxI	GGCC	6 cut(s)	32, 244, 948, 992, 1033, 1311
ApaLI	GTGCAC	1 cut(s)	1563
ApeKI	GCWGC	2 cut(s)	397, 1057
ApoI	RAATTY	2 cut(s)	18, 251
Asp700I	GAANNNNTTC	1 cut(s)	604
Asp718I	GGTACC	1 cut(s)	815
AspA2I	CCTAGG	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	1620
AspS9I	GGNCC	3 cut(s)	244, 410, 1008
AsuHPI	GGTGA	9 cut(s)	94, 443, 479, 521, 864, 1009, 1235, 1450, 1723
AsuII	TTCGAA	1 cut(s)	769
AvaII	GGWCC	2 cut(s)	410, 1008
AvrII	CCTAGG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	1567
BalI	TGGCCA	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	815
BanII	GRGCYC	2 cut(s)	346, 1233
BauI	CACGAG	1 cut(s)	1769
Bbv12I	GWGCWC	4 cut(s)	448, 546, 1567, 1770
BbvI	GCAGC	2 cut(s)	384, 1069
BccI	CCATC	5 cut(s)	371, 617, 923, 1286, 1529
BceAI	ACGGC	3 cut(s)	1020, 1286, 1298
BciT130I	CCWGG	3 cut(s)	15, 1349, 1421
BciVI	GTATCC	1 cut(s)	1020
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	4 cut(s)	1214, 1617, 1671, 1849
BfaI	CTAG	3 cut(s)	339, 831, 1841
BfmI	CTRYAG	1 cut(s)	1476
BfuI	GTATCC	1 cut(s)	1020
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	2 cut(s)	398, 1058
BlnI	CCTAGG	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	1176
BlsI	GCNGC	2 cut(s)	399, 1059
BmcAI	AGTACT	1 cut(s)	1115
Bme1390I	CCNGG	3 cut(s)	15, 1349, 1421
Bme18I	GGWCC	2 cut(s)	410, 1008
BmgT120I	GGNCC	3 cut(s)	244, 410, 1008
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	3 cut(s)	15, 1349, 1421
BmsI	GCATC	5 cut(s)	159, 384, 763, 1005, 1150
BplI	GAGNNNNNCTC	2 cut(s)	1614, 1646
Bpu1102I	GCTNAGC	1 cut(s)	1176
Bpu14I	TTCGAA	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	1691
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	1214
BsaJI	CCNNGG	8 cut(s)	35, 77, 338, 819, 945, 1268, 1347, 1703
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 1375
Bse118I	RCCGGY	1 cut(s)	994
Bse1I	ACTGG	6 cut(s)	35, 437, 695, 794, 936, 1700
Bse3DI	GCAATG	1 cut(s)	1656
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	3 cut(s)	15, 1349, 1421
BseDI	CCNNGG	8 cut(s)	35, 77, 338, 819, 945, 1268, 1347, 1703
BseGI	GGATG	6 cut(s)	138, 174, 289, 1165, 1297, 1317
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	538, 1375
BseMI	GCAATG	1 cut(s)	1656
BseMII	CTCAG	4 cut(s)	498, 871, 1167, 1434
BseNI	ACTGG	6 cut(s)	35, 437, 695, 794, 936, 1700
BseSI	GKGCMC	1 cut(s)	1567
BseXI	GCAGC	2 cut(s)	384, 1069
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	6 cut(s)	34, 246, 950, 994, 1035, 1313
BshNI	GGYRCC	1 cut(s)	815
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	4 cut(s)	448, 546, 1567, 1770
BsiSI	CCGG	2 cut(s)	413, 995
BslFI	GGGAC	2 cut(s)	675, 1354
BslI	CCNNNNNNNGG	2 cut(s)	538, 1375
BsmAI	GTCTC	4 cut(s)	1214, 1617, 1671, 1849
BsmFI	GGGAC	2 cut(s)	675, 1354
BsmI	GAATGC	1 cut(s)	1329
BsnI	GGCC	6 cut(s)	34, 246, 950, 994, 1035, 1313
Bso31I	GGTCTC	1 cut(s)	1214
Bsp119I	TTCGAA	1 cut(s)	769
Bsp1286I	GDGCHC	6 cut(s)	346, 448, 546, 1233, 1567, 1770
Bsp143I	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
Bsp1720I	GCTNAGC	1 cut(s)	1176
Bsp19I	CCATGG	2 cut(s)	35, 819
BspACI	CCGC	2 cut(s)	472, 539
BspANI	GGCC	6 cut(s)	34, 246, 950, 994, 1035, 1313
BspCNI	CTCAG	4 cut(s)	499, 870, 1168, 1435
BspHI	TCATGA	3 cut(s)	387, 648, 1495
BspLI	GGNNCC	1 cut(s)	817
BspPI	GGATC	3 cut(s)	197, 701, 1651
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	1 cut(s)	769
BspT107I	GGYRCC	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	1214
BsrDI	GCAATG	1 cut(s)	1656
BsrFI	RCCGGY	1 cut(s)	994
BsrI	ACTGG	6 cut(s)	35, 437, 695, 794, 936, 1700
BssAI	RCCGGY	1 cut(s)	994
BssECI	CCNNGG	8 cut(s)	35, 77, 338, 819, 945, 1268, 1347, 1703
BssMI	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
BssSI	CACGAG	1 cut(s)	1769
BssT1I	CCWWGG	6 cut(s)	35, 77, 338, 819, 945, 1703
Bst2BI	CACGAG	1 cut(s)	1769
Bst2UI	CCWGG	3 cut(s)	15, 1349, 1421
Bst4CI	ACNGT	2 cut(s)	1557, 1614
Bst6I	CTCTTC	3 cut(s)	569, 791, 1824
BstAPI	GCANNNNNTGC	2 cut(s)	1117, 1626
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	769
BstC8I	GCNNGC	3 cut(s)	1440, 1746, 1812
BstDEI	CTNAG	4 cut(s)	507, 857, 1176, 1443
BstDSI	CCRYGG	3 cut(s)	35, 819, 1268
BstENI	CCTNNNNNAGG	1 cut(s)	1373
BstF5I	GGATG	6 cut(s)	138, 174, 289, 1165, 1297, 1317
BstHHI	GCGC	1 cut(s)	1620
BstKTI	GATC	6 cut(s)	130, 192, 289, 597, 696, 1659
BstMAI	GTCTC	4 cut(s)	1214, 1617, 1671, 1849
BstMBI	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	4 cut(s)	947, 1117, 1126, 1626
BstNI	CCWGG	3 cut(s)	15, 1349, 1421
BstNSI	RCATGY	1 cut(s)	1748
BstSCI	CCNGG	3 cut(s)	13, 1347, 1419
BstSFI	CTRYAG	1 cut(s)	1476
BstSLI	GKGCMC	1 cut(s)	1567
BstV1I	GCAGC	2 cut(s)	384, 1069
BstX2I	RGATCY	4 cut(s)	127, 189, 693, 1656
BstYI	RGATCY	4 cut(s)	127, 189, 693, 1656
BsuI	GTATCC	1 cut(s)	1020
BsuRI	GGCC	6 cut(s)	34, 246, 950, 994, 1035, 1313
BtgI	CCRYGG	3 cut(s)	35, 819, 1268
BtsCI	GGATG	6 cut(s)	138, 174, 289, 1165, 1297, 1317
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	3 cut(s)	504, 664, 929
Cac8I	GCNNGC	3 cut(s)	1440, 1746, 1812
CaiI	CAGNNNCTG	1 cut(s)	1626
CciI	TCATGA	3 cut(s)	387, 648, 1495
CfoI	GCGC	1 cut(s)	1620
Cfr10I	RCCGGY	1 cut(s)	994
Cfr13I	GGNCC	3 cut(s)	244, 410, 1008
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	5 cut(s)	61, 742, 816, 976, 1114
CviQI	GTAC	5 cut(s)	61, 742, 816, 976, 1114
DdeI	CTNAG	4 cut(s)	507, 857, 1176, 1443
DpnI	GATC	6 cut(s)	129, 191, 288, 596, 695, 1658
DpnII	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
DrdI	GACNNNNNNGTC	1 cut(s)	1006
DseDI	GACNNNNNNGTC	1 cut(s)	1006
EaeI	YGGCCR	4 cut(s)	32, 992, 1033, 1311
Eam1104I	CTCTTC	3 cut(s)	569, 791, 1824
EarI	CTCTTC	3 cut(s)	569, 791, 1824
Eco130I	CCWWGG	6 cut(s)	35, 77, 338, 819, 945, 1703
Eco24I	GRGCYC	2 cut(s)	346, 1233
Eco31I	GGTCTC	1 cut(s)	1214
Eco32I	GATATC	1 cut(s)	1417
Eco47I	GGWCC	2 cut(s)	410, 1008
EcoNI	CCTNNNNNAGG	1 cut(s)	1373
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	3 cut(s)	13, 1347, 1419
EcoRV	GATATC	1 cut(s)	1417
EcoT14I	CCWWGG	6 cut(s)	35, 77, 338, 819, 945, 1703
EcoT22I	ATGCAT	1 cut(s)	1750
EcoT38I	GRGCYC	2 cut(s)	346, 1233
ErhI	CCWWGG	6 cut(s)	35, 77, 338, 819, 945, 1703
FalI	AAGNNNNNCTT	2 cut(s)	1803, 1835
FaqI	GGGAC	2 cut(s)	675, 1354
FauI	CCCGC	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	398, 1058
FokI	GGATG	6 cut(s)	125, 181, 296, 1172, 1304, 1304
FriOI	GRGCYC	2 cut(s)	346, 1233
Fsp4HI	GCNGC	2 cut(s)	398, 1058
FspBI	CTAG	3 cut(s)	339, 831, 1841
FspI	TGCGCA	1 cut(s)	1619
GlaI	GCGC	1 cut(s)	1619
GluI	GCNGC	2 cut(s)	398, 1058
HaeIII	GGCC	6 cut(s)	34, 246, 950, 994, 1035, 1313
HapII	CCGG	2 cut(s)	413, 995
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	1620
Hin6I	GCGC	1 cut(s)	1618
HinP1I	GCGC	1 cut(s)	1618
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	7 cut(s)	85, 306, 526, 848, 869, 924, 1264
HpaII	CCGG	2 cut(s)	413, 995
HphI	GGTGA	9 cut(s)	94, 443, 479, 521, 864, 1009, 1235, 1450, 1723
Hpy166II	GTNNAC	4 cut(s)	238, 265, 1565, 1681
Hpy188I	TCNGA	3 cut(s)	599, 687, 1335
Hpy188III	TCNNGA	6 cut(s)	388, 649, 859, 1258, 1496, 1670
Hpy8I	GTNNAC	4 cut(s)	238, 265, 1565, 1681
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	113, 1600, 1748
HpyCH4III	ACNGT	2 cut(s)	1557, 1614
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	669, 754, 1111, 1565, 1744, 1748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	947, 1117, 1126, 1626
HpyF3I	CTNAG	4 cut(s)	507, 857, 1176, 1443
HpySE526I	ACGT	1 cut(s)	63
HspAI	GCGC	1 cut(s)	1618
KpnI	GGTACC	1 cut(s)	819
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	3 cut(s)	79, 177, 541
Lsp1109I	GCAGC	2 cut(s)	384, 1069
LweI	GCATC	5 cut(s)	159, 384, 763, 1005, 1150
MaeI	CTAG	3 cut(s)	339, 831, 1841
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	7 cut(s)	435, 502, 523, 852, 997, 1426, 1778
MalI	GATC	6 cut(s)	129, 191, 288, 596, 695, 1658
MboI	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
MboII	GAAGA	6 cut(s)	128, 556, 688, 778, 1666, 1811
MflI	RGATCY	4 cut(s)	127, 189, 693, 1656
MhlI	GDGCHC	6 cut(s)	346, 448, 546, 1233, 1567, 1770
MlsI	TGGCCA	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	34
MlyI	GAGTC	2 cut(s)	520, 918
MmeI	TCCRAC	1 cut(s)	1739
Mox20I	TGGCCA	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	1750
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	6 cut(s)	57, 717, 899, 1215, 1323, 1469
MslI	CAYNNNNRTG	2 cut(s)	392, 1773
Msp20I	TGGCCA	1 cut(s)	34
MspI	CCGG	2 cut(s)	413, 995
MspR9I	CCNGG	3 cut(s)	15, 1349, 1421
Mva1269I	GAATGC	1 cut(s)	1329
MvaI	CCWGG	3 cut(s)	15, 1349, 1421
MwoI	GCNNNNNNNGC	4 cut(s)	947, 1117, 1126, 1626
NcoI	CCATGG	2 cut(s)	35, 819
NdeII	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
NlaIV	GGNNCC	1 cut(s)	817
NmuCI	GTSAC	4 cut(s)	502, 523, 852, 997
NsbI	TGCGCA	1 cut(s)	1619
NsiI	ATGCAT	1 cut(s)	1750
NspI	RCATGY	1 cut(s)	1748
NspV	TTCGAA	1 cut(s)	769
OliI	CACNNNNGTG	1 cut(s)	1773
PaeI	GCATGC	1 cut(s)	1748
PagI	TCATGA	3 cut(s)	387, 648, 1495
PciSI	GCTCTTC	1 cut(s)	569
PctI	GAATGC	1 cut(s)	1329
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	5 cut(s)	85, 306, 848, 869, 1264
PkrI	GCNGC	2 cut(s)	399, 1059
PleI	GAGTC	2 cut(s)	520, 918
PpsI	GAGTC	2 cut(s)	520, 918
Ppu21I	YACGTR	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	1199
Psp6I	CCWGG	3 cut(s)	13, 1347, 1419
PspGI	CCWGG	3 cut(s)	13, 1347, 1419
PspN4I	GGNNCC	1 cut(s)	817
PspPI	GGNCC	3 cut(s)	244, 410, 1008
PstNI	CAGNNNCTG	1 cut(s)	1626
PsuI	RGATCY	4 cut(s)	127, 189, 693, 1656
RsaI	GTAC	5 cut(s)	62, 743, 817, 977, 1115
RsaNI	GTAC	5 cut(s)	61, 742, 816, 976, 1114
RseI	CAYNNNNRTG	2 cut(s)	392, 1773
SalI	GTCGAC	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	6 cut(s)	57, 717, 899, 1215, 1323, 1469
SatI	GCNGC	2 cut(s)	398, 1058
Sau3AI	GATC	6 cut(s)	127, 189, 286, 594, 693, 1656
Sau96I	GGNCC	3 cut(s)	244, 410, 1008
ScaI	AGTACT	1 cut(s)	1115
SchI	GAGTC	2 cut(s)	520, 918
ScrFI	CCNGG	3 cut(s)	15, 1349, 1421
SduI	GDGCHC	6 cut(s)	346, 448, 546, 1233, 1567, 1770
SfaNI	GCATC	5 cut(s)	159, 384, 763, 1005, 1150
SfcI	CTRYAG	1 cut(s)	1476
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	2 cut(s)	410, 1008
SmiMI	CAYNNNNRTG	2 cut(s)	392, 1773
SmlI	CTYRAG	1 cut(s)	1670
SmoI	CTYRAG	1 cut(s)	1670
SphI	GCATGC	1 cut(s)	1748
SsiI	CCGC	2 cut(s)	472, 539
SspMI	CTAG	3 cut(s)	339, 831, 1841
StyD4I	CCNGG	3 cut(s)	13, 1347, 1419
StyI	CCWWGG	6 cut(s)	35, 77, 338, 819, 945, 1703
TaaI	ACNGT	2 cut(s)	1557, 1614
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	7 cut(s)	249, 264, 417, 642, 675, 769, 1822
TatI	WGTACW	1 cut(s)	1113
TfiI	GAWTC	5 cut(s)	85, 306, 848, 869, 1264
Tru1I	TTAA	6 cut(s)	57, 717, 899, 1215, 1323, 1469
Tru9I	TTAA	6 cut(s)	57, 717, 899, 1215, 1323, 1469
TscAI	CASTG	3 cut(s)	511, 671, 936
TseFI	GTSAC	4 cut(s)	502, 523, 852, 997
TseI	GCWGC	2 cut(s)	397, 1057
Tsp45I	GTSAC	4 cut(s)	502, 523, 852, 997
TspRI	CASTG	3 cut(s)	511, 671, 936
VneI	GTGCAC	1 cut(s)	1563
VpaK11BI	GGWCC	2 cut(s)	410, 1008
XagI	CCTNNNNNAGG	1 cut(s)	1373
XapI	RAATTY	2 cut(s)	18, 251
XceI	RCATGY	1 cut(s)	1748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	3 cut(s)	339, 831, 1841
ZrmI	AGTACT	1 cut(s)	1115
Zsp2I	ATGCAT	1 cut(s)	1750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.