Rmu_ssc0000259.1_g000038

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000259.1
Physical Location & Seq
Forward (+)
176345 .. 177661
1317 bp
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UTR
Exon/CDS
Intron
Rmu_ssc0000259.1_g000038.1.cds

Sequence Viewer

Length: 456 bp
atgatcgagttgcagtacttgctctcatggcaaaatgaagctataaatagagcgattgaggatgccatacttgaagctgagcaaatgggtgtcaaagttataagtttaggtctctttaatcagaggaatccacggctgaaaatcaaggtggtggatgggagtagcttagctgtggctgtcatccttaacagcattccgaaaggaacaactcaggttctccttgcaggcaacctcacaaaggtagcttatgcccttgccttttctttgtgccagagggatatcgaggtagtcacattacagcaggctgagtatttgaagctcaccaaatcattaaatgctacagagggtaaggtggttcatgacagaagctatgctcaaaagatttggttggtgggagatgggttgagtaaaaaagaacagtttgtgacaatcagaactggttgccaaggagggtga

Protein Analysis

151

Amino Acids

16.62

Weight (kDa)

8.91

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 2 cut(s) 74, 316
AluBI AGCT 7 cut(s) 41, 77, 165, 170, 245, 319, 369
AluI AGCT 7 cut(s) 41, 77, 165, 170, 245, 319, 369
Alw26I GTCTC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 313
BccI CCATC 2 cut(s) 149, 392
BceAI ACGGC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 339
BlpI GCTNAGC 2 cut(s) 78, 166
BmcAI AGTACT 1 cut(s) 17
BmsI GCATC 1 cut(s) 52
Bpu1102I GCTNAGC 2 cut(s) 78, 166
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 131, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 131, 445
BseGI GGATG 3 cut(s) 67, 160, 180
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 69, 224, 297
BseNI ACTGG 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 2 cut(s) 78, 166
BspCNI CTCAG 3 cut(s) 70, 223, 298
BspHI TCATGA 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 131, 445
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 226, 303
BstDEI CTNAG 4 cut(s) 78, 166, 210, 306
BstDSI CCRYGG 1 cut(s) 131
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 3 cut(s) 67, 160, 180
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 19, 28
BstSFI CTRYAG 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 131
BtsCI GGATG 3 cut(s) 67, 160, 180
Cac8I GCNNGC 2 cut(s) 226, 303
CciI TCATGA 1 cut(s) 358
Csp6I GTAC 1 cut(s) 16
CviAII CATG 2 cut(s) 27, 359
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 4 cut(s) 78, 166, 210, 306
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 280
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 2 cut(s) 30, 362
FaiI YATR 7 cut(s) 28, 44, 68, 101, 249, 360, 372
FatI CATG 2 cut(s) 26, 358
FokI GGATG 3 cut(s) 74, 167, 167
Hin1II CATG 2 cut(s) 30, 362
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 123, 198, 434
Hpy188III TCNNGA 1 cut(s) 359
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 13, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 28
HpyF3I CTNAG 4 cut(s) 78, 166, 210, 306
Hsp92II CATG 2 cut(s) 30, 362
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 5 cut(s) 197, 210, 284, 287, 423
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 289, 424
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MnlI CCTC 7 cut(s) 52, 117, 242, 267, 277, 337, 443
MseI TTAA 3 cut(s) 117, 186, 332
Mva1269I GAATGC 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 19, 28
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 30, 362
NmuCI GTSAC 2 cut(s) 289, 424
PagI TCATGA 1 cut(s) 358
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 127
PsiI TTATAA 1 cut(s) 101
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 3 cut(s) 117, 186, 332
Sau3AI GATC 1 cut(s) 3
ScaI AGTACT 1 cut(s) 17
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 6, 282
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 3 cut(s) 117, 186, 332
Tru9I TTAA 3 cut(s) 117, 186, 332
TseFI GTSAC 2 cut(s) 289, 424
Tsp45I GTSAC 2 cut(s) 289, 424
TspDTI ATGAA 2 cut(s) 51, 347
XagI CCTNNNNNAGG 1 cut(s) 236
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.