Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

9033419 .. 9038821

Gene Structure 5403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1086700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGTTGGACTTCGTTTTGGCGTCGAATCGAGAACACCCCATTTCTAGGGTTTTCGCTAAAATACTACTTGCGATTCCAGAAAGGAGCTATCAATAGCTTGATTGAGGAAGCCATTGTTCAAGCTGGGAGAAAGGGTGTCAAAGTTATAAGTCTCGGCCTCTTGAATCAGGCCAGTTTCTACCTACCAATATCTGAATATGGTGGTCTCTATGTTAACAGACATCCTCATCTCAAAATCAAGGTTGTGGATGGAAGTAGCTTAGCTGTTGCTGTAATCCTAAACAGCAGTCCAAAAGGGACAACCCAAGTTGTTCTTAGAGGCAACCTCACAAAGGTTGCTTATGCCATTGCCTATGCTTTTAGCCAGAAGGGTATCCAGGTAGCTACATTACACCAAGCTGAGTATATGAAGCTCGCCAAATCGTTGAGTGCCACTGAAAGTAGTTTGGTTCTTGCAGCAAGTTACACACACATGGTTATGTGCTCGTCGTTAGAGGAAAATGAGTACAAAATGACTATTTTTTTTTTGAGTGCACCAAGAGGAACATTATTTGTTCCCTTCTCTCACTTACCACAAAAAAAAAAAAAAAAAAAACTGCGCAAAGACTGCTTCGACCACCACACTCCAGCGATGAAGATTCCCACATCTCTTGAGAATGTTCACTCTTGTGAGAATTGGTTGCCCAGAAGGGTGATGAGGGCATGGCGTATAGCAGGCATAGTGCATGCCTTGGAAGGTTGGAAGGAGCATGATTGTGATAACACCATGTCCAACACAGAGAAAATTTGGCAAGCAAGTCTTCGACATGGCTTTCACCCTCTTGTCGTCACCACTCAACCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

283

Amino Acids

31.88

Weight (kDa)

9.75

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	104 - 274	1.5e-54	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
Acc16I	TGCGCA	1 cut(s)	602
AcsI	RAATTY	1 cut(s)	786
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	47, 334
AgsI	TTSAA	2 cut(s)	122, 166
AjnI	CCWGG	1 cut(s)	378
AleI	CACNNNNGTG	1 cut(s)	669
AluBI	AGCT	8 cut(s)	89, 99, 125, 261, 266, 386, 401, 415
AluI	AGCT	8 cut(s)	89, 99, 125, 261, 266, 386, 401, 415
Alw21I	GWGCWC	2 cut(s)	488, 538
Alw26I	GTCTC	2 cut(s)	158, 212
Alw44I	GTGCAC	1 cut(s)	534
AoxI	GGCC	2 cut(s)	157, 171
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	603
AsuHPI	GGTGA	3 cut(s)	706, 809, 823
BaeGI	GKGCMC	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	2 cut(s)	488, 538
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	158, 212
BfaI	CTAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	459
BlpI	GCTNAGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpmI	CTGGAG	1 cut(s)	612
Bpu1102I	GCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	732
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 334
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	2 cut(s)	223, 256
BseLI	CCNNNNNNNGG	2 cut(s)	47, 334
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	1 cut(s)	470
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	2 cut(s)	159, 173
BsiHKAI	GWGCWC	2 cut(s)	488, 538
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	47, 334
BsmAI	GTCTC	2 cut(s)	158, 212
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	159, 173
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	488, 538
Bsp1720I	GCTNAGC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	159, 173
BspCNI	CTCAG	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	732
BssNI	GRCGYC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	609
BstC8I	GCNNGC	4 cut(s)	417, 718, 729, 795
BstDEI	CTNAG	3 cut(s)	262, 317, 402
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	223, 256
BstHHI	GCGC	1 cut(s)	603
BstMAI	GTCTC	2 cut(s)	158, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	159, 173
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	2 cut(s)	223, 256
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	4 cut(s)	417, 718, 729, 795
CfoI	GCGC	1 cut(s)	603
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	508
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	6 cut(s)	475, 705, 728, 752, 769, 809
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	262, 317, 402
Eco130I	CCWWGG	1 cut(s)	732
Eco31I	GGTCTC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	6 cut(s)	478, 708, 731, 755, 772, 812
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 786, 818
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	6 cut(s)	474, 704, 727, 751, 768, 808
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	2 cut(s)	210, 263
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	459
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	159, 173
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	6 cut(s)	478, 708, 731, 755, 772, 812
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	27, 75, 166, 640
HpaI	GTTAAC	1 cut(s)	217
HphI	GGTGA	3 cut(s)	706, 809, 823
Hpy166II	GTNNAC	3 cut(s)	217, 536, 664
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	4 cut(s)	31, 79, 163, 653
Hpy8I	GTNNAC	3 cut(s)	217, 536, 664
Hpy99I	CGWCG	2 cut(s)	27, 493
HpyAV	CCTTC	5 cut(s)	364, 571, 684, 731, 739
HpyCH4V	TGCA	3 cut(s)	458, 536, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	3 cut(s)	262, 317, 402
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	6 cut(s)	478, 708, 731, 755, 772, 812
HspAI	GCGC	1 cut(s)	601
KspAI	GTTAAC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	86, 748
Lsp1109I	GCAGC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	464, 829
MboII	GAAGA	2 cut(s)	649, 794
MhlI	GDGCHC	2 cut(s)	488, 538
MluCI	AATT	2 cut(s)	676, 786
MmeI	TCCRAC	2 cut(s)	722, 798
MnlI	CCTC	9 cut(s)	100, 170, 237, 314, 338, 490, 536, 693, 831
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	4 cut(s)	473, 479, 669, 756
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	609
NlaIII	CATG	6 cut(s)	478, 708, 731, 755, 772, 812
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	829
NsbI	TGCGCA	1 cut(s)	602
NspI	RCATGY	1 cut(s)	731
OliI	CACNNNNGTG	1 cut(s)	669
PaeI	GCATGC	1 cut(s)	731
PfeI	GAWTC	4 cut(s)	27, 75, 166, 640
PkrI	GCNGC	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	378
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	4 cut(s)	473, 479, 669, 756
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	2 cut(s)	488, 538
SmiMI	CAYNNNNRTG	4 cut(s)	473, 479, 669, 756
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SphI	GCATGC	1 cut(s)	731
Sse9I	AATT	2 cut(s)	676, 786
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	732
TaqI	TCGA	4 cut(s)	25, 30, 615, 805
TasI	AATT	2 cut(s)	676, 786
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	4 cut(s)	27, 75, 166, 640
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	2 cut(s)	425, 650
TspRI	CASTG	1 cut(s)	442
VneI	GTGCAC	1 cut(s)	534
XagI	CCTNNNNNAGG	1 cut(s)	332
XapI	RAATTY	1 cut(s)	786
XceI	RCATGY	1 cut(s)	731
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.