Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

22682573 .. 22682946

Gene Structure 374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGTAGAGTCAGGAGTTTGTCACTTGTAAGCCACCTGAAGAAAGCAGTGAAGAAAGTGAGACTCATTTTTCTTGGCCTTAAACTACAGAGGTGGCGCATAGCTTCAGTTCTTGGATGCGCTGCAACTAAAGGCGGTAATAGCTTCCACTTGAGAAGAATTCATAGCACAATTAGTCGTTCTTCTTCGATTGATTATGAGGATGTTGATCAAAGGGCTGATGCTTTCATTGCTAATTTTCGACGGCAGCTCAGATTAGAGAGACAGGTTTCTCTGGAGCTACGCTACTGCCGGAGGGAGAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

102

Amino Acids

11.84

Weight (kDa)

11.42

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF761	PF05553	67 - 98	3.9e-12	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	59, 90
AluBI	AGCT	4 cut(s)	104, 144, 250, 280
AluI	AGCT	4 cut(s)	104, 144, 250, 280
Alw26I	GTCTC	2 cut(s)	55, 256
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	122, 247
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	99, 122
BbvI	GCAGC	2 cut(s)	109, 259
BceAI	ACGGC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	55, 256
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	123, 248
BlsI	GCNGC	2 cut(s)	124, 249
BmsI	GCATC	2 cut(s)	107, 211
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	207
BseGI	GGATG	2 cut(s)	122, 208
BseJI	GATNNNNATC	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	109, 259
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	55, 256
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	122, 208
BstHHI	GCGC	2 cut(s)	99, 122
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	2 cut(s)	55, 256
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 230
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	109, 259
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	122, 208
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
CfoI	GCGC	2 cut(s)	99, 122
CviJI	RGCY	7 cut(s)	33, 78, 104, 144, 218, 250, 280
CviKI_1	RGCY	7 cut(s)	33, 78, 104, 144, 218, 250, 280
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	59, 90
EcoRI	GAATTC	1 cut(s)	159
FaiI	YATR	3 cut(s)	101, 165, 198
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	123, 248
FokI	GGATG	2 cut(s)	129, 215
Fsp4HI	GCNGC	2 cut(s)	123, 248
GlaI	GCGC	2 cut(s)	98, 121
GluI	GCNGC	2 cut(s)	123, 248
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	292
HhaI	GCGC	2 cut(s)	99, 122
Hin6I	GCGC	2 cut(s)	97, 120
HinP1I	GCGC	2 cut(s)	97, 120
HinfI	GANTC	2 cut(s)	9, 63
HpaII	CCGG	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	2 cut(s)	13, 275
Hpy99I	CGWCG	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 230
HpyF3I	CTNAG	1 cut(s)	251
HspAI	GCGC	2 cut(s)	97, 120
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	50, 251, 260, 305
Lsp1109I	GCAGC	2 cut(s)	109, 259
LweI	GCATC	2 cut(s)	107, 211
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	5 cut(s)	52, 64, 168, 174, 177
MluCI	AATT	3 cut(s)	159, 171, 235
MlyI	GAGTC	2 cut(s)	18, 57
MnlI	CCTC	3 cut(s)	84, 193, 288
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	141, 230
NdeII	GATC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	124, 249
PleI	GAGTC	2 cut(s)	17, 57
PpsI	GAGTC	2 cut(s)	17, 57
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	123, 248
Sau3AI	GATC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	18, 57
SetI	ASST	7 cut(s)	39, 95, 106, 146, 252, 270, 282
SfaNI	GCATC	2 cut(s)	107, 211
SfcI	CTRYAG	1 cut(s)	86
SgeI	CNNG	9 cut(s)	25, 38, 49, 86, 125, 163, 278, 287, 304
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	3 cut(s)	159, 171, 235
SsiI	CCGC	1 cut(s)	135
TaqI	TCGA	2 cut(s)	188, 241
TasI	AATT	3 cut(s)	159, 171, 235
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	2 cut(s)	122, 247
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	152, 217
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.