Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

8997914 .. 8998956

Gene Structure 1043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1086300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCCACGATCATGTTGTCGTGTGGCTACATTACACCAAGATGAGTATATAAAGCTCACTAAATCGTTGAGTGCCATTGAAAGTAGTTTGGTTGCAGAAAGTCATGCACACAAGATTTGGTTGGTTGGAGATGGATTGACTGAAAAAGAACAGTTGAGTGCACCAAGTGGAACATTATTTGTTCCCTTCTCTCAATTACCACCAAAAAAACTGCGCAAAGACTGCTTCTACCACTACACTCCAGCGATGAAGATTCCCACATCTCTTGAGAATGTTCACTCTTGTGAGAATTGGTTGCCCAGAAGAGTGATGAGTGCATGGCGTATAGCAGGAGTACAAGCCTTGGACGGTTGGAAGGAGCATGATTGTGATAACACCATGTCAGCACTGAGAAAATTTGGCAAGCAAGTCTTCGACATGGCTTTCACCCTCTTGTCGTCACCACTCAACCGATGTTATTATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

156

Amino Acids

17.66

Weight (kDa)

8.75

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	6 - 132	2.5e-48	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	395
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	80
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	163
Alw44I	GTGCAC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	418, 432
BaeGI	GKGCMC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	163
BccI	CCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	153, 350
Bst6I	CTCTTC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	403
BtgZI	GCGATG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	404
CfoI	GCGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	335
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	6 cut(s)	12, 104, 318, 362, 379, 418
CviJI	RGCY	4 cut(s)	26, 55, 341, 422
CviKI_1	RGCY	4 cut(s)	26, 55, 341, 422
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
DraIII	CACNNNGTG	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	6 cut(s)	15, 107, 321, 365, 382, 421
FaiI	YATR	9 cut(s)	13, 48, 50, 105, 319, 326, 363, 380, 419
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	6 cut(s)	11, 103, 317, 361, 378, 417
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	6 cut(s)	15, 107, 321, 365, 382, 421
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	253
HphI	GGTGA	2 cut(s)	418, 432
Hpy166II	GTNNAC	2 cut(s)	161, 277
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	161, 277
HpyAV	CCTTC	2 cut(s)	196, 349
HpyCH4III	ACNGT	2 cut(s)	153, 350
HpyCH4V	TGCA	4 cut(s)	95, 107, 161, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	6 cut(s)	15, 107, 321, 365, 382, 421
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	3 cut(s)	255, 313, 315
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	3 cut(s)	262, 315, 403
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	3 cut(s)	194, 289, 395
MmeI	TCCRAC	2 cut(s)	106, 332
MnlI	CCTC	1 cut(s)	440
MslI	CAYNNNNRTG	4 cut(s)	10, 39, 282, 366
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	6 cut(s)	15, 107, 321, 365, 382, 421
NmuCI	GTSAC	1 cut(s)	438
NsbI	TGCGCA	1 cut(s)	215
OliI	CACNNNNGTG	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	253
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	4 cut(s)	10, 39, 282, 366
Sau3AI	GATC	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	1 cut(s)	57
SmiMI	CAYNNNNRTG	4 cut(s)	10, 39, 282, 366
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	194, 289, 395
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	153, 350
TaqI	TCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	194, 289, 395
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	438
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	393
VneI	GTGCAC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.