Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

34327950 .. 34329549

Gene Structure 1600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGTGTCAAAGTTATAAATTTAGGTCTCTTTAATCAGGGTGAGGGGCTCAATAATTATGGTGGTATATATGTCCAGAGGAACCCACGGCTGAAAGTCAAGGTGGTGGATGGGAGTAGCTTGGCTGTGGCCGTCATCCTTAACAGCATTCCGAAAGGGACAACCCAGGTTCTCCTTACAGGCAACCTCACAAAGGTTGCTTATGCCCTTGCCTCTTCTTTGTGCCAGAGAGATATCCAGGTAGTTACATTACAGCAGGCTAAGTATTTGAAGCTCACCAAATCATTAAATGCTACAGAGGGTATGGTGGTTCATGACAGAAGCTATGCTCAAAAGATTTGGTTGGTGGGAGATGGGTTGAGTAAAAAAGAACAGTTGAGTGCTCCAAAAGGAACAATTTTTGTTCCCTTCTCTCAATTTCCACCAAAACAGTTGCGCAGAGACTGCCTCTACCACTACACACCAGCAATGAAGATCCCCAAGTCTCTTGAGAATGTTTACTCTTGTGAGAACTGGTTGCCAAGGAGGGTAATGAGTGCGTGGCGTATAGCAGGAATAGTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

9.91

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	57 - 187	8e-54	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
Acc16I	TGCGCA	1 cut(s)	437
AclWI	GGATC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	165, 237
AluBI	AGCT	3 cut(s)	120, 274, 324
AluI	AGCT	3 cut(s)	120, 274, 324
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	3 cut(s)	32, 435, 489
AlwI	GGATC	1 cut(s)	469
AlwNI	CAGNNNCTG	1 cut(s)	444
AoxI	GGCC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	53, 268
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	385
BccI	CCATC	2 cut(s)	104, 347
BceAI	ACGGC	2 cut(s)	104, 116
BciT130I	CCWGG	2 cut(s)	167, 239
BcoDI	GTCTC	3 cut(s)	32, 435, 489
BfmI	CTRYAG	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	167, 239
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	167, 239
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpuEI	CTTGAG	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	86, 165, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	167, 239
BseDI	CCNNGG	3 cut(s)	86, 165, 521
BseGI	GGATG	2 cut(s)	115, 135
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	518
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	3 cut(s)	32, 435, 489
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	51, 385
Bsp143I	GATC	1 cut(s)	474
BspANI	GGCC	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	86, 165, 521
BssMI	GATC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	167, 239
Bst4CI	ACNGT	2 cut(s)	375, 432
Bst6I	CTCTTC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	86
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	115, 135
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	3 cut(s)	32, 435, 489
BstMBI	GATC	1 cut(s)	474
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	167, 239
BstSCI	CCNGG	2 cut(s)	165, 237
BstSFI	CTRYAG	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	115, 135
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	444
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	438
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	8 cut(s)	49, 91, 120, 125, 131, 260, 274, 324
CviKI_1	RGCY	8 cut(s)	49, 91, 120, 125, 131, 260, 274, 324
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	165, 237
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	1 cut(s)	317
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	313
FokI	GGATG	2 cut(s)	122, 122
FriOI	GRGCYC	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HphI	GGTGA	2 cut(s)	53, 268
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	76, 314, 488
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	375, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	2 cut(s)	207, 484
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	2 cut(s)	51, 385
MluCI	AATT	4 cut(s)	19, 55, 396, 416
MnlI	CCTC	7 cut(s)	37, 72, 197, 223, 292, 458, 519
MseI	TTAA	3 cut(s)	33, 141, 287
MspR9I	CCNGG	2 cut(s)	167, 239
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	167, 239
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	1 cut(s)	474
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	437
PagI	TCATGA	1 cut(s)	313
PctI	GAATGC	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	165, 237
PspGI	CCWGG	2 cut(s)	165, 237
PspN4I	GGNNCC	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	33, 141, 287
Sau3AI	GATC	1 cut(s)	474
ScrFI	CCNGG	2 cut(s)	167, 239
SduI	GDGCHC	2 cut(s)	51, 385
SetI	ASST	9 cut(s)	28, 105, 122, 171, 189, 198, 243, 276, 326
SfcI	CTRYAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	4 cut(s)	19, 55, 396, 416
StyD4I	CCNGG	2 cut(s)	165, 237
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	2 cut(s)	375, 432
TasI	AATT	4 cut(s)	19, 55, 396, 416
Tru1I	TTAA	3 cut(s)	33, 141, 287
Tru9I	TTAA	3 cut(s)	33, 141, 287
TspDTI	ATGAA	2 cut(s)	302, 485
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.