pycom07g06920

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000300
Physical Location & Seq
Forward (+)
6235579 .. 6238110
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06920.1

Sequence Viewer

Length: 1086 bp
ATGCCAATCTACGACTACGTATATGGCACCACGGACAAATCAAGCGATCCACTTTATGAAACTTCACTCAAGAGGGAGGAGGAATCGCCAGATGTCCTCCATCTAACCCATCTAACCACACCCGAGTCCATCTATCATCTACCGCTAGGATTTGCTGCCTTAGCCTCCAGGCCCTACACAAGGACGTGGTACTTGTGGCTGATGTGGCCTGTGACGTTGTGGTCTATGATGATAACTTGGATCCACGGCCGTACATTTGTTGTCGACAGGCACCGCTTTGACAAGCTCAGATTACAGACTTGGGCCATTCCCAAGTACAGTTTGCAATACTTTATGCAATGGCAAAATGAAGCTATCAATGGTTTGATTGAGGACGCCATACTTGAAGCAGAGGAAAAGGGTGTCAAGGTTTTAAGCCTAGGTCTCTTGAATCAGGGTGAGGAGTTGAATAGATACGGCGGTCTCTACGTTCAAAGGCATCCGCACCTAAAAATCCAGGTGGTGGATGGAAGTAGCTTGGCTGTGGCAGTAATCCTAAACAGCATTCCAAAAGGGACAACCCAAGTTGTTCTTAGAGGCAAACTCACAAAGGTTGCTTATGCCATTGCCCATGCTTTGAGCCAGAAGGGTGTCCAGGTAGCTACATTATATCAGACTGAGTATTTGAAGCTCACCAAATCACTAGGCACTGAAAGTAATTTGGTAGTTGCAAAAAGTTATGCCCAAAAGATATGGTTAGTGGGTGATGGACTGACCGAGAAAGAACAGATGAGTGCACCAAAAAGAACATTATTTGTTCCCTTCTCACAATTCCCACCTAAAAAATTGCGCAAGGACTGCTTTTATCACTACACTCCAGCAATGAAGACGCCCACATCTCTTGAGAATGTTCACGCTTGCGAGAACTGGTTGCCAAGAAGGGTGATGAGTGCATCGAGAGTAGCAGGAATAGTGCATGCCTTGGAAGGTTGGAAGGAGCATGACTGTGGTTACACCATGTCCAACATCGACAAAGTTTGGCAAGCAAGTCTTGTGCATGGGTTTCAGCCTCTGACGATCAGTACCATTCACACAAAAAATCAGTGA

Protein Analysis

362

Amino Acids

41.24

Weight (kDa)

9.07

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CER1-like_C PF12076 189 - 350 6.8e-72 CER1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 220
Acc16I TGCGCA 1 cut(s) 830
AccB1I GGYRCC 2 cut(s) 26, 270
AccB7I CCANNNNNTGG 1 cut(s) 502
AccI GTMKAC 1 cut(s) 264
AciI CCGC 4 cut(s) 143, 274, 459, 482
AclWI GGATC 3 cut(s) 41, 235, 248
AcoI YGGCCR 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 375, 869
AfaI GTAC 4 cut(s) 191, 253, 317, 1063
AfiI CCNNNNNNNGG 2 cut(s) 180, 502
AgsI TTSAA 5 cut(s) 386, 430, 448, 473, 667
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 3 cut(s) 167, 495, 633
AluBI AGCT 5 cut(s) 286, 353, 516, 641, 670
AluI AGCT 5 cut(s) 286, 353, 516, 641, 670
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 2 cut(s) 428, 467
Alw44I GTGCAC 1 cut(s) 774
AlwI GGATC 3 cut(s) 41, 235, 248
AlwNI CAGNNNCTG 1 cut(s) 1051
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 170, 206, 247, 303
ApaLI GTGCAC 1 cut(s) 774
ApeKI GCWGC 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
AspA2I CCTAGG 1 cut(s) 418
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 2 cut(s) 171, 303
AsuHPI GGTGA 4 cut(s) 449, 664, 755, 934
AvaI CYCGRG 1 cut(s) 122
AvrII CCTAGG 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 778
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BamHI GGATCC 1 cut(s) 240
BanI GGYRCC 2 cut(s) 26, 270
BbsI GAAGAC 1 cut(s) 872
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 1 cut(s) 142
BccI CCATC 5 cut(s) 108, 117, 137, 500, 740
BceAI ACGGC 3 cut(s) 234, 262, 472
BciT130I CCWGG 3 cut(s) 169, 497, 635
BcoDI GTCTC 2 cut(s) 428, 467
BfaI CTAG 3 cut(s) 146, 419, 683
BisI GCNGC 1 cut(s) 156
BlnI CCTAGG 1 cut(s) 418
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 3 cut(s) 169, 497, 635
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 171, 303
BmiI GGNNCC 3 cut(s) 28, 242, 272
BmrFI CCNGG 3 cut(s) 169, 497, 635
BmsI GCATC 2 cut(s) 487, 941
BpiI GAAGAC 1 cut(s) 872
BplI GAGNNNNNCTC 2 cut(s) 567, 599
BpmI CTGGAG 2 cut(s) 151, 840
Bpu10I CCTNAGC 1 cut(s) 160
BpuEI CTTGAG 2 cut(s) 53, 902
BsaAI YACGTR 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 375, 869
BsaI GGTCTC 2 cut(s) 428, 467
BsaJI CCNNGG 4 cut(s) 30, 244, 418, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 502
Bse1I ACTGG 1 cut(s) 911
Bse3DI GCAATG 3 cut(s) 344, 603, 867
BseBI CCWGG 3 cut(s) 169, 497, 635
BseDI CCNNGG 4 cut(s) 30, 244, 418, 960
BseGI GGATG 2 cut(s) 478, 511
BseLI CCNNNNNNNGG 2 cut(s) 180, 502
BseMI GCAATG 3 cut(s) 344, 603, 867
BseMII CTCAG 2 cut(s) 301, 648
BseNI ACTGG 1 cut(s) 911
BseRI GAGGAG 2 cut(s) 92, 455
BseSI GKGCMC 1 cut(s) 778
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 4 cut(s) 172, 208, 249, 305
BshNI GGYRCC 2 cut(s) 26, 270
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 180, 502
BsmAI GTCTC 2 cut(s) 428, 467
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 4 cut(s) 172, 208, 249, 305
Bso31I GGTCTC 2 cut(s) 428, 467
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 778
Bsp143I GATC 3 cut(s) 46, 240, 1056
BspACI CCGC 4 cut(s) 143, 274, 459, 482
BspANI GGCC 4 cut(s) 172, 208, 249, 305
BspCNI CTCAG 2 cut(s) 300, 649
BspLI GGNNCC 3 cut(s) 28, 242, 272
BspPI GGATC 3 cut(s) 41, 235, 248
BspT107I GGYRCC 2 cut(s) 26, 270
BspTNI GGTCTC 2 cut(s) 428, 467
BsrDI GCAATG 3 cut(s) 344, 603, 867
BsrI ACTGG 1 cut(s) 911
BssECI CCNNGG 4 cut(s) 30, 244, 418, 960
BssMI GATC 3 cut(s) 46, 240, 1056
BssNI GRCGYC 2 cut(s) 375, 869
BssT1I CCWWGG 2 cut(s) 418, 960
Bst2UI CCWGG 3 cut(s) 169, 497, 635
Bst4CI ACNGT 2 cut(s) 320, 986
BstACI GRCGYC 2 cut(s) 375, 869
BstAPI GCANNNNNTGC 1 cut(s) 837
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 898, 957, 1023
BstDEI CTNAG 4 cut(s) 160, 287, 572, 657
BstDSI CCRYGG 2 cut(s) 30, 244
BstENI CCTNNNNNAGG 1 cut(s) 178
BstF5I GGATG 2 cut(s) 478, 511
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 3 cut(s) 49, 243, 1059
BstMAI GTCTC 2 cut(s) 428, 467
BstMBI GATC 3 cut(s) 46, 240, 1056
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 161, 205, 837
BstNI CCWGG 3 cut(s) 169, 497, 635
BstNSI RCATGY 1 cut(s) 959
BstSCI CCNGG 3 cut(s) 167, 495, 633
BstSLI GKGCMC 1 cut(s) 778
BstSNI TACGTA 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 872
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BstZI CGGCCG 1 cut(s) 247
BsuRI GGCC 4 cut(s) 172, 208, 249, 305
BtgI CCRYGG 2 cut(s) 30, 244
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 2 cut(s) 478, 511
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 3 cut(s) 898, 957, 1023
CaiI CAGNNNCTG 1 cut(s) 1051
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 2 cut(s) 171, 303
CseI GACGC 2 cut(s) 383, 877
Csp6I GTAC 4 cut(s) 190, 252, 316, 1062
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviAII CATG 5 cut(s) 611, 956, 980, 997, 1037
CviQI GTAC 4 cut(s) 190, 252, 316, 1062
DdeI CTNAG 4 cut(s) 160, 287, 572, 657
DpnI GATC 3 cut(s) 48, 242, 1058
DpnII GATC 3 cut(s) 46, 240, 1056
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 247
Eco105I TACGTA 1 cut(s) 19
Eco130I CCWWGG 2 cut(s) 418, 960
Eco31I GGTCTC 2 cut(s) 428, 467
Eco52I CGGCCG 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 167, 495, 633
EcoT14I CCWWGG 2 cut(s) 418, 960
ErhI CCWWGG 2 cut(s) 418, 960
FaeI CATG 5 cut(s) 614, 959, 983, 1000, 1040
FalI AAGNNNNNCTT 6 cut(s) 555, 587, 824, 856, 1014, 1046
FaqI GGGAC 1 cut(s) 568
FatI CATG 5 cut(s) 610, 955, 979, 996, 1036
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 2 cut(s) 465, 518
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 146, 419, 683
FspI TGCGCA 1 cut(s) 830
GlaI GCGC 1 cut(s) 830
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 151, 840
HaeIII GGCC 4 cut(s) 172, 208, 249, 305
HgaI GACGC 2 cut(s) 383, 877
HhaI GCGC 1 cut(s) 831
Hin1I GRCGYC 2 cut(s) 375, 869
Hin1II CATG 5 cut(s) 614, 959, 983, 1000, 1040
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 83, 125, 430
HphI GGTGA 4 cut(s) 449, 664, 755, 934
Hpy166II GTNNAC 3 cut(s) 265, 776, 892
Hpy188I TCNGA 3 cut(s) 290, 654, 1053
Hpy188III TCNNGA 4 cut(s) 70, 427, 881, 936
Hpy8I GTNNAC 3 cut(s) 265, 776, 892
HpyAV CCTTC 5 cut(s) 619, 811, 912, 959, 967
HpyCH4III ACNGT 2 cut(s) 320, 986
HpyCH4IV ACGT 4 cut(s) 18, 185, 215, 468
HpyCH4V TGCA 7 cut(s) 325, 337, 710, 776, 932, 955, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 205, 837
HpyF3I CTNAG 4 cut(s) 160, 287, 572, 657
HpySE526I ACGT 4 cut(s) 18, 185, 215, 468
Hsp92I GRCGYC 2 cut(s) 375, 869
Hsp92II CATG 5 cut(s) 614, 959, 983, 1000, 1040
HspAI GCGC 1 cut(s) 829
Kzo9I GATC 3 cut(s) 46, 240, 1056
LmnI GCTCC 1 cut(s) 976
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 487, 941
MaeI CTAG 3 cut(s) 146, 419, 683
MaeII ACGT 4 cut(s) 18, 185, 215, 468
MaeIII GTNAC 2 cut(s) 211, 989
MalI GATC 3 cut(s) 48, 242, 1058
MboI GATC 3 cut(s) 46, 240, 1056
MboII GAAGA 1 cut(s) 877
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 3 cut(s) 697, 809, 824
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 950, 1026
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 984
MspR9I CCNGG 3 cut(s) 169, 497, 635
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 3 cut(s) 169, 497, 635
MwoI GCNNNNNNNGC 3 cut(s) 161, 205, 837
NdeII GATC 3 cut(s) 46, 240, 1056
NlaIII CATG 5 cut(s) 614, 959, 983, 1000, 1040
NlaIV GGNNCC 3 cut(s) 28, 242, 272
NmuCI GTSAC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 830
NspI RCATGY 1 cut(s) 959
PaeI GCATGC 1 cut(s) 959
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 83, 430
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 167, 495, 633
PspGI CCWGG 3 cut(s) 167, 495, 633
PspN4I GGNNCC 3 cut(s) 28, 242, 272
PspPI GGNCC 2 cut(s) 171, 303
PstNI CAGNNNCTG 1 cut(s) 1051
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 4 cut(s) 191, 253, 317, 1063
RsaNI GTAC 4 cut(s) 190, 252, 316, 1062
RseI CAYNNNNRTG 1 cut(s) 984
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 3 cut(s) 46, 240, 1056
Sau96I GGNCC 2 cut(s) 171, 303
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 169, 497, 635
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 2 cut(s) 487, 941
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 2 cut(s) 68, 881
SmoI CTYRAG 2 cut(s) 68, 881
SnaBI TACGTA 1 cut(s) 19
SphI GCATGC 1 cut(s) 959
Sse9I AATT 3 cut(s) 697, 809, 824
SsiI CCGC 4 cut(s) 143, 274, 459, 482
SspMI CTAG 3 cut(s) 146, 419, 683
StyD4I CCNGG 3 cut(s) 167, 495, 633
StyI CCWWGG 2 cut(s) 418, 960
TaaI ACNGT 2 cut(s) 320, 986
TaiI ACGT 4 cut(s) 21, 188, 218, 471
TaqI TCGA 3 cut(s) 264, 935, 1008
TaqII GACCGA 1 cut(s) 770
TasI AATT 3 cut(s) 697, 809, 824
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 83, 430
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 72, 363, 878
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 694
Van91I CCANNNNNTGG 1 cut(s) 502
VneI GTGCAC 1 cut(s) 774
XagI CCTNNNNNAGG 1 cut(s) 178
XceI RCATGY 1 cut(s) 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XmaJI CCTAGG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 3 cut(s) 146, 419, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.