Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

30864206 .. 30865324

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028971

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTTGTTCCGTTCTCTCAATTTCCACCAAAACAGTTGTGCAGAGACTACTTCTACCTCTACACACTAGCTATGAAGATCCCCAAGTCTCCTGAGAATGTTTACTCTTGTGAGAATTGGTTGTCGAGGAGGGTGATGAGTGTGTGGCGTATAGTAGGAATAGTGCATGCATTGGAAGGTTGGAATGAGCATGAGTGTGGCTACACCATGTCCAACATTGACAAACAGTGGCTTGATGGTTCGGCCGGTGGTGCAATTTCTGATTTGGCGGAATGCTTACAGCGGGTGTTATTGCTGCAAGGCATTGGGAAACATGTTCCATGCATGATGTACATGGTCTGCTTTGGTGGCGGTAGAATATGCTTGTTGGTGGATCTCAACAGTGAGTCGGTTACCATGGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

136

Amino Acids

15.32

Weight (kDa)

6.26

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	1 - 77	4.5e-32	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	269, 283, 351
AclWI	GGATC	2 cut(s)	73, 381
AcoI	YGGCCR	1 cut(s)	243
AfaI	GTAC	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	313
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	39, 93
AlwI	GGATC	2 cut(s)	73, 381
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	39, 93
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	142
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	61
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	39, 93
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	78, 373
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	3 cut(s)	269, 283, 351
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	73, 381
BsrFI	RCCGGY	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	78, 373
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	36, 228, 383
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	93, 405
BstDSI	CCRYGG	1 cut(s)	396
BstEII	GGTNACC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	81, 376
BstMAI	GTCTC	2 cut(s)	39, 93
BstMBI	GATC	2 cut(s)	78, 373
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 348
BstNSI	RCATGY	2 cut(s)	170, 317
BstPI	GGTNACC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	78, 373
BstYI	RGATCY	2 cut(s)	78, 373
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	233, 388
Cac8I	GCNNGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	8 cut(s)	167, 191, 208, 314, 321, 325, 334, 397
CviJI	RGCY	4 cut(s)	71, 201, 232, 245
CviKI_1	RGCY	4 cut(s)	71, 201, 232, 245
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	93, 405
DpnI	GATC	2 cut(s)	80, 375
DpnII	GATC	2 cut(s)	78, 373
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	396
Eco52I	CGGCCG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	2 cut(s)	172, 326
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	8 cut(s)	170, 194, 211, 317, 324, 328, 337, 400
FatI	CATG	8 cut(s)	166, 190, 207, 313, 320, 324, 333, 396
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	8 cut(s)	170, 194, 211, 317, 324, 328, 337, 400
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	3 cut(s)	36, 228, 383
HpyCH4V	TGCA	6 cut(s)	42, 166, 170, 254, 298, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 348
HpyF3I	CTNAG	2 cut(s)	93, 405
Hsp92II	CATG	8 cut(s)	170, 194, 211, 317, 324, 328, 337, 400
Kzo9I	GATC	2 cut(s)	78, 373
LpnPI	CCDG	2 cut(s)	105, 259
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	80, 375
MboI	GATC	2 cut(s)	78, 373
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	2 cut(s)	78, 373
MluCI	AATT	3 cut(s)	20, 115, 255
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	2 cut(s)	161, 237
MnlI	CCTC	3 cut(s)	68, 120, 123
Mph1103I	ATGCAT	2 cut(s)	172, 326
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	251, 348
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	2 cut(s)	78, 373
NlaIII	CATG	8 cut(s)	170, 194, 211, 317, 324, 328, 337, 400
NsiI	ATGCAT	2 cut(s)	172, 326
NspI	RCATGY	2 cut(s)	170, 317
PaeI	GCATGC	1 cut(s)	170
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	313
PspEI	GGTNACC	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	78, 373
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	195
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	2 cut(s)	78, 373
SchI	GAGTC	1 cut(s)	395
SetI	ASST	3 cut(s)	60, 73, 181
SmiMI	CAYNNNNRTG	1 cut(s)	195
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	3 cut(s)	20, 115, 255
SsiI	CCGC	3 cut(s)	269, 283, 351
SspMI	CTAG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	3 cut(s)	36, 228, 383
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	20, 115, 255
TatI	WGTACW	1 cut(s)	330
TscAI	CASTG	2 cut(s)	233, 388
TseI	GCWGC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	233, 388
XceI	RCATGY	2 cut(s)	170, 317
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	2 cut(s)	172, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.