Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000021.1

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

8890 .. 9693

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000021.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcttccacacctggaattcttactaactggccatggacacctcttgggagctttaagtacgtggtgttagctccttgggtgattcacagcacatactcatatatgtttggagaagaaggcacagatctattttacatcctcgtatttccatttctgttgtggaggatgctccacaaccagatatggatctcactttctcgctatcaaactgccaaaggcaaaggaacaatcgtggacaagggcctcgaatttgaacaagtcgacagagaaagagattgggatgatcaaatcatattcaatggaatcctattttacatagtcaggtgcgtcctgcctatggctcaaactgacctaccaatttggaggggaaatgggttggtcatgacgatgctgcttcatgctggtccggtagagtacctctactactggttacacagagcacttcaccaccatttcctctactctcgctaccattctcatcaccattcctctattgtcactgagccaattacttgtaagacatatctatatatcctaaaactacacatattgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

186

Amino Acids

22.03

Weight (kDa)

7.21

Isoelectric Point (pI)

25.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	18, 251
AfaI	GTAC	2 cut(s)	62, 419
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	257, 301
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	54, 74
AluI	AGCT	2 cut(s)	54, 74
Alw21I	GWGCWC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	2 cut(s)	32, 244
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	2 cut(s)	18, 251
AspS9I	GGNCC	2 cut(s)	244, 407
AsuHPI	GGTGA	3 cut(s)	94, 440, 476
AvaII	GGWCC	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	15
BclI	TGATCA	1 cut(s)	286
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	244, 407
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	159, 381
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	35, 77
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	35, 434
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	35, 77
BseGI	GGATG	3 cut(s)	138, 174, 289
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	35, 434
BseXI	GCAGC	1 cut(s)	381
BshFI	GGCC	2 cut(s)	34, 246
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	340
BsnI	GGCC	2 cut(s)	34, 246
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	127, 189, 286
Bsp19I	CCATGG	1 cut(s)	35
BspANI	GGCC	2 cut(s)	34, 246
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	384
BspPI	GGATC	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	35, 434
BssECI	CCNNGG	2 cut(s)	35, 77
BssMI	GATC	3 cut(s)	127, 189, 286
BssT1I	CCWWGG	2 cut(s)	35, 77
Bst2UI	CCWGG	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	138, 174, 289
BstKTI	GATC	3 cut(s)	130, 192, 289
BstMBI	GATC	3 cut(s)	127, 189, 286
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	127, 189
BstYI	RGATCY	2 cut(s)	127, 189
BsuRI	GGCC	2 cut(s)	34, 246
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	138, 174, 289
BtsIMutI	CAGTG	1 cut(s)	501
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	244, 407
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	61, 418
CviAII	CATG	3 cut(s)	36, 385, 401
CviJI	RGCY	7 cut(s)	5, 34, 54, 74, 246, 344, 508
CviKI_1	RGCY	7 cut(s)	5, 34, 54, 74, 246, 344, 508
CviQI	GTAC	2 cut(s)	61, 418
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	129, 191, 288
DpnII	GATC	3 cut(s)	127, 189, 286
EaeI	YGGCCR	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	35, 77
Eco47I	GGWCC	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	35, 77
ErhI	CCWWGG	2 cut(s)	35, 77
FaeI	CATG	3 cut(s)	39, 388, 404
FatI	CATG	3 cut(s)	35, 384, 400
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	3 cut(s)	125, 181, 296
Fsp4HI	GCNGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	34, 246
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	39, 388, 404
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	85, 306
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	3 cut(s)	94, 440, 476
Hpy166II	GTNNAC	2 cut(s)	238, 265
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	2 cut(s)	238, 265
HpyAV	CCTTC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	39, 388, 404
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	127, 189, 286
LmnI	GCTCC	3 cut(s)	51, 79, 177
LpnPI	CCDG	8 cut(s)	16, 27, 194, 310, 347, 390, 415, 423
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	159, 381
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	432, 499
MalI	GATC	3 cut(s)	129, 191, 288
MboI	GATC	3 cut(s)	127, 189, 286
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	2 cut(s)	127, 189
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	4 cut(s)	18, 251, 360, 510
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	8 cut(s)	54, 152, 159, 257, 360, 431, 470, 502
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	34
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	3 cut(s)	127, 189, 286
NlaIII	CATG	3 cut(s)	39, 388, 404
NmuCI	GTSAC	1 cut(s)	499
PagI	TCATGA	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	85, 306
PkrI	GCNGC	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	244, 407
PsuI	RGATCY	2 cut(s)	127, 189
RsaI	GTAC	2 cut(s)	62, 419
RsaNI	GTAC	2 cut(s)	61, 418
RseI	CAYNNNNRTG	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	127, 189, 286
Sau96I	GGNCC	2 cut(s)	244, 407
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	8 cut(s)	16, 46, 56, 66, 76, 329, 357, 423
SfaNI	GCATC	2 cut(s)	159, 381
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	18, 251, 360, 510
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	35, 77
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	249, 264
TasI	AATT	4 cut(s)	18, 251, 360, 510
TfiI	GAWTC	2 cut(s)	85, 306
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	18, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.