Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000335.1

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

221493 .. 222230

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000335.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggcttccaatcctggaattctgactgaatttccatggaaacctcttggaaactttaagtacgtggtggtggctccctgggtgatacacagcacatacttgttcattgttaatgacggagacaacagagatctatcttacttcctcatatttccattcatgttgtttaggatgcttcacaaccagttatggatctccctttctcgatataaaacctccaaaggcagcggtcggatcatcgacaagggcctagagttcgaacaagttgacagagaaagaaactgggatgatcaaattatagtcaatggactattgttcttcctaggcagcaggcacttgcccggaggtgataacctaccgatgtggagaggagaaggattccttctaacatttctgcttcatgttggtccggtggagtttctctactattggttgcatagagctctgcaccaccattacctttactctcgctaccattctcaccaccattcctccattgtcactgagccaatttcttataagacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

175

Amino Acids

20.71

Weight (kDa)

8.06

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	200, 242
AcsI	RAATTY	2 cut(s)	18, 29
AfaI	GTAC	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	13, 77
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	200, 242
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	225, 327
ApoI	RAATTY	2 cut(s)	18, 29
AspA2I	CCTAGG	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	247, 407
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	94, 359, 473
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	407
AvrII	CCTAGG	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	237, 339
BciT130I	CCWGG	2 cut(s)	15, 79
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	251, 323
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	2 cut(s)	226, 328
BlnI	CCTAGG	1 cut(s)	322
BlsI	GCNGC	2 cut(s)	227, 329
Bme1390I	CCNGG	3 cut(s)	15, 79, 342
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	247, 407
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	3 cut(s)	15, 79, 342
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	292
Bpu14I	TTCGAA	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	4 cut(s)	35, 77, 78, 322
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bse1I	ACTGG	2 cut(s)	184, 287
BseBI	CCWGG	2 cut(s)	15, 79
BseDI	CCNNGG	4 cut(s)	35, 77, 78, 322
BseGI	GGATG	2 cut(s)	177, 292
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	184, 287
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	237, 339
BsgI	GTGCAG	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	342, 410
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	4 cut(s)	130, 192, 234, 289
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	200, 242
BspT104I	TTCGAA	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	184, 287
BssECI	CCNNGG	4 cut(s)	35, 77, 78, 322
BssMI	GATC	4 cut(s)	130, 192, 234, 289
BssT1I	CCWWGG	2 cut(s)	35, 322
Bst2UI	CCWGG	2 cut(s)	15, 79
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	177, 292
BstKTI	GATC	4 cut(s)	133, 195, 237, 292
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	130, 192, 234, 289
BstMCI	CGRYCG	1 cut(s)	232
BstNI	CCWGG	2 cut(s)	15, 79
BstSCI	CCNGG	3 cut(s)	13, 77, 340
BstV1I	GCAGC	2 cut(s)	237, 339
BstX2I	RGATCY	2 cut(s)	130, 192
BstYI	RGATCY	2 cut(s)	130, 192
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	177, 292
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	247, 407
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	36, 160, 401
CviJI	RGCY	5 cut(s)	5, 74, 249, 443, 508
CviKI_1	RGCY	5 cut(s)	5, 74, 249, 443, 508
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	4 cut(s)	132, 194, 236, 291
DpnII	GATC	4 cut(s)	130, 192, 234, 289
Ecl136II	GAGCTC	1 cut(s)	443
Eco130I	CCWWGG	2 cut(s)	35, 322
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	13, 77
EcoT14I	CCWWGG	2 cut(s)	35, 322
EcoT38I	GRGCYC	1 cut(s)	445
ErhI	CCWWGG	2 cut(s)	35, 322
FaeI	CATG	3 cut(s)	39, 163, 404
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	3 cut(s)	35, 159, 400
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	226, 328
FokI	GGATG	2 cut(s)	184, 299
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	2 cut(s)	226, 328
FspBI	CTAG	2 cut(s)	251, 323
GluI	GCNGC	2 cut(s)	226, 328
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	342, 410
Hin1II	CATG	3 cut(s)	39, 163, 404
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	2 cut(s)	342, 410
HphI	GGTGA	3 cut(s)	94, 359, 473
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	24, 234
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	368, 392
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	436, 448
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	39, 163, 404
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	130, 192, 234, 289
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	27, 64, 91, 197, 268, 316, 355, 423
Lsp1109I	GCAGC	2 cut(s)	237, 339
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	251, 323
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	132, 194, 236, 291
MboI	GATC	4 cut(s)	130, 192, 234, 289
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	2 cut(s)	130, 192
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	4 cut(s)	18, 29, 294, 510
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	54, 155, 226, 338, 362, 502
MseI	TTAA	2 cut(s)	57, 111
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	342, 410
MspR9I	CCNGG	3 cut(s)	15, 79, 342
MvaI	CCWGG	2 cut(s)	15, 79
NciI	CCSGG	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	4 cut(s)	130, 192, 234, 289
NlaIII	CATG	3 cut(s)	39, 163, 404
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	258
PasI	CCCWGGG	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	378
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	227, 329
Ppu21I	YACGTR	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	13, 77
PspGI	CCWGG	2 cut(s)	13, 77
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	247, 407
PsuI	RGATCY	2 cut(s)	130, 192
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	57, 111
SatI	GCNGC	2 cut(s)	226, 328
Sau3AI	GATC	4 cut(s)	130, 192, 234, 289
Sau96I	GGNCC	2 cut(s)	247, 407
ScrFI	CCNGG	3 cut(s)	15, 79, 342
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	8 cut(s)	46, 66, 218, 349, 357, 445, 462, 527
SfaNI	GCATC	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	1 cut(s)	407
Sse9I	AATT	4 cut(s)	18, 29, 294, 510
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	251, 323
SstI	GAGCTC	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	13, 77, 340
StyI	CCWWGG	2 cut(s)	35, 322
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	205, 240, 258
TasI	AATT	4 cut(s)	18, 29, 294, 510
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	57, 111
Tru9I	TTAA	2 cut(s)	57, 111
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	2 cut(s)	225, 327
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	94, 148, 389
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	18, 29
XmaJI	CCTAGG	1 cut(s)	322
XspI	CTAG	2 cut(s)	251, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.