Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028268.1

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1431

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028268.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ggtgagaggctcaataataatggtggtatatatgtccagaggaatccacggctgaaaatcaaggtggtggatgggagtagcttagctgtggctgtcatccttaacagcattccgaaaggaacaactcaggttctccttgcaggcaacctcacaaaggtagcttatgcccttgccttttctttgtgccagagagatatccaggtagttacattacagcaggctgagtatttgaagctcaccaaatcattaaatgctacagagggtaaggtggttcatgacagaagctatgctcaaaagatttggttggtgggagatgggttgagtaaaaaagaacagttgagtgcaccaaaaggaacaatttttgttcccttctctcaatttccaccaaaacagttgcgcagagactgcttctaccactacacaccagcaatgaagatccccaagtctcttgagaatgtttactcttgtgagaactggttgccaaggagggtgatgagtgcgtggcgtatagcaggaatagtgcatgcattggaaggttggaatgagcacgagtgtggtcacaccatgtccagcattgacaaagtttggcaagcaactcttcgacatggctttcagcctctaatctccaaagaggcaaagattgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

215

Amino Acids

24.15

Weight (kDa)

9.59

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	398
AclWI	GGATC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	198
AleI	CACNNNNGTG	1 cut(s)	552
AluBI	AGCT	5 cut(s)	81, 86, 161, 235, 285
AluI	AGCT	5 cut(s)	81, 86, 161, 235, 285
Alw21I	GWGCWC	2 cut(s)	346, 549
Alw26I	GTCTC	2 cut(s)	396, 450
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	405
ApaLI	GTGCAC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	14, 229, 502
BaeGI	GKGCMC	1 cut(s)	346
BauI	CACGAG	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	346, 549
BccI	CCATC	2 cut(s)	65, 308
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	396, 450
BfmI	CTRYAG	1 cut(s)	255
BlpI	GCTNAGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
Bpu1102I	GCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	47, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	47, 482
BseGI	GGATG	2 cut(s)	76, 96
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	140, 213
BseNI	ACTGG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	346
BsiHKAI	GWGCWC	2 cut(s)	346, 549
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	396, 450
BsmI	GAATGC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	346, 549
Bsp143I	GATC	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	139, 214
BspHI	TCATGA	1 cut(s)	274
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	47, 482
BssMI	GATC	1 cut(s)	435
BssSI	CACGAG	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	336, 393
Bst6I	CTCTTC	1 cut(s)	603
BstAPI	GCANNNNNTGC	1 cut(s)	405
BstC8I	GCNNGC	4 cut(s)	142, 219, 525, 591
BstDEI	CTNAG	3 cut(s)	82, 126, 222
BstDSI	CCRYGG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	76, 96
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	2 cut(s)	396, 450
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	76, 96
Cac8I	GCNNGC	4 cut(s)	142, 219, 525, 591
CaiI	CAGNNNCTG	1 cut(s)	405
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	399
CviAII	CATG	4 cut(s)	275, 524, 565, 605
DdeI	CTNAG	3 cut(s)	82, 126, 222
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	482
Eco32I	GATATC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	4 cut(s)	278, 527, 568, 608
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FatI	CATG	4 cut(s)	274, 523, 564, 604
FokI	GGATG	2 cut(s)	83, 83
FspI	TGCGCA	1 cut(s)	398
GlaI	GCGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	4 cut(s)	278, 527, 568, 608
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	3 cut(s)	14, 229, 502
Hpy166II	GTNNAC	2 cut(s)	344, 460
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	37, 275, 449
Hpy8I	GTNNAC	2 cut(s)	344, 460
HpyAV	CCTTC	2 cut(s)	379, 527
HpyCH4III	ACNGT	2 cut(s)	336, 393
HpyCH4V	TGCA	4 cut(s)	140, 344, 523, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	3 cut(s)	82, 126, 222
Hsp92II	CATG	4 cut(s)	278, 527, 568, 608
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	205, 557
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	2 cut(s)	445, 590
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	346, 549
MluCI	AATT	2 cut(s)	357, 377
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	33, 158, 253, 480, 625, 627
Mph1103I	ATGCAT	1 cut(s)	529
MseI	TTAA	2 cut(s)	102, 248
MslI	CAYNNNNRTG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	4 cut(s)	278, 527, 568, 608
NmuCI	GTSAC	1 cut(s)	557
NsbI	TGCGCA	1 cut(s)	398
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	552
PaeI	GCATGC	1 cut(s)	527
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	102, 248
Sau3AI	GATC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	346, 549
SfcI	CTRYAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	2 cut(s)	357, 377
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	2 cut(s)	336, 393
TaqI	TCGA	1 cut(s)	601
TasI	AATT	2 cut(s)	357, 377
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	102, 248
Tru9I	TTAA	2 cut(s)	102, 248
TseFI	GTSAC	1 cut(s)	557
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	263, 446
VneI	GTGCAC	1 cut(s)	342
XagI	CCTNNNNNAGG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	527
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.