Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

22991648 .. 22992282

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0168400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACGAATGGCAAGCGGAATCCCAGAAAAGCTACTGGTCCCGTGGCGGTGGCAAAGCGTCAGAGGGTAGATTATCGTTGGGGGCATGATTTGCCAATTGGATCCTTAGACCCTGCCCATTTAAGGGTTGAAGATAATGCCCTGGCTCTTCCTGCGGTCAGCTCTGGCCCCGAGGATAGGGATTACGCTGGCAGAACTAGAAGCTTTGTTGTTCGAGTCTTTGGGGGAACGGGGTCCTGGAAGGATTTGGATGACTTCCTGTCCAGATTAAGCATCCTAGGGCTCAAAAGGGAACAGTTCACTGCTTTGTACTTCCACAGGCTGTTGCAGAACAAAGATCAGCGGGCAGTGGTGCCTGTTGAATTTGTAGACAAGATGCGCAACCGTTTAGTGACTTATAATGGAATTGTAAAGCGCTGGGAAGTAGCTTACAATGAATGGGAGCCAACAGTCTATCCGGATAAAATAGATTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

159

Amino Acids

18.28

Weight (kDa)

9.55

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
Acc16I	TGCGCA	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	369
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	4 cut(s)	16, 47, 155, 343
AclWI	GGATC	2 cut(s)	96, 109
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	1 cut(s)	311
AfeI	AGCGCT	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	123, 124, 177
AgsI	TTSAA	2 cut(s)	131, 362
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	141, 236
AluBI	AGCT	4 cut(s)	32, 162, 204, 428
AluI	AGCT	4 cut(s)	32, 162, 204, 428
AlwI	GGATC	2 cut(s)	96, 109
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	457
Aor51HI	AGCGCT	1 cut(s)	416
AoxI	GGCC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	362
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	381, 417
AspS9I	GGNCC	3 cut(s)	38, 167, 234
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	38, 234
AvrII	CCTAGG	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	143, 238
BfaI	CTAG	2 cut(s)	198, 278
BfoI	RGCGCY	1 cut(s)	418
BlnI	CCTAGG	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	143, 238
Bme18I	GGWCC	2 cut(s)	38, 234
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	38, 167, 234
BmiI	GGNNCC	6 cut(s)	40, 103, 169, 235, 354, 444
BmrFI	CCNGG	2 cut(s)	143, 238
BmsI	GCATC	2 cut(s)	282, 366
BsaJI	CCNNGG	4 cut(s)	42, 141, 171, 277
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 124, 177
Bse1I	ACTGG	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	457
BseBI	CCWGG	2 cut(s)	143, 238
BseDI	CCNNGG	4 cut(s)	42, 141, 171, 277
BseGI	GGATG	2 cut(s)	256, 273
BseLI	CCNNNNNNNGG	3 cut(s)	123, 124, 177
BseNI	ACTGG	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	417
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	123, 124, 177
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	101, 337
BspACI	CCGC	4 cut(s)	16, 47, 155, 343
BspANI	GGCC	1 cut(s)	168
BspEI	TCCGGA	1 cut(s)	457
BspLI	GGNNCC	6 cut(s)	40, 103, 169, 235, 354, 444
BspPI	GGATC	2 cut(s)	96, 109
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	4 cut(s)	42, 141, 171, 277
BssMI	GATC	2 cut(s)	101, 337
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	143, 238
Bst4CI	ACNGT	3 cut(s)	297, 386, 451
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	14, 190, 345
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	256, 273
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	2 cut(s)	381, 417
BstKTI	GATC	2 cut(s)	104, 340
BstMBI	GATC	2 cut(s)	101, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 152
BstNI	CCWGG	2 cut(s)	143, 238
BstSCI	CCNGG	2 cut(s)	141, 236
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	256, 273
BtsI	GCAGTG	2 cut(s)	300, 354
BtsIMutI	CAGTG	2 cut(s)	300, 354
Cac8I	GCNNGC	3 cut(s)	14, 190, 345
CfoI	GCGC	2 cut(s)	381, 417
Cfr13I	GGNCC	3 cut(s)	38, 167, 234
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	9 cut(s)	32, 146, 162, 168, 204, 283, 322, 428, 445
CviKI_1	RGCY	9 cut(s)	32, 146, 162, 168, 204, 283, 322, 428, 445
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	103, 339
DpnII	GATC	2 cut(s)	101, 337
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	38, 234
Eco47III	AGCGCT	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	141, 236
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	89
FaiI	YATR	2 cut(s)	87, 399
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	85
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	369
FokI	GGATG	2 cut(s)	260, 263
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	198, 278
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	2 cut(s)	380, 416
GsaI	CCCAGC	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	381, 417
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	379, 415
HinP1I	GCGC	2 cut(s)	379, 415
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	2 cut(s)	19, 216
HpaII	CCGG	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	300, 370
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	264, 458
Hpy8I	GTNNAC	2 cut(s)	300, 370
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	3 cut(s)	297, 386, 451
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 152
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	2 cut(s)	379, 415
Kpn2I	TCCGGA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	101, 337
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	442
LweI	GCATC	2 cut(s)	282, 366
MaeI	CTAG	2 cut(s)	198, 278
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	103, 339
MboI	GATC	2 cut(s)	101, 337
MboII	GAAGA	2 cut(s)	140, 143
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	96, 362, 405
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	2 cut(s)	57, 166
MroI	TCCGGA	1 cut(s)	457
MseI	TTAA	2 cut(s)	122, 269
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	143, 238
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	143, 238
MwoI	GCNNNNNNNGC	2 cut(s)	91, 152
NdeII	GATC	2 cut(s)	101, 337
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	6 cut(s)	40, 103, 169, 235, 354, 444
NmuCI	GTSAC	1 cut(s)	391
NsbI	TGCGCA	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	236
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	234
PsiI	TTATAA	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	141, 236
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	2 cut(s)	141, 236
PspN4I	GGNNCC	6 cut(s)	40, 103, 169, 235, 354, 444
PspPI	GGNCC	3 cut(s)	38, 167, 234
PspPPI	RGGWCCY	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	122, 269
Sau3AI	GATC	2 cut(s)	101, 337
Sau96I	GGNCC	3 cut(s)	38, 167, 234
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	143, 238
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	4 cut(s)	34, 164, 206, 430
SfaNI	GCATC	2 cut(s)	282, 366
SinI	GGWCC	2 cut(s)	38, 234
Sse9I	AATT	3 cut(s)	96, 362, 405
SsiI	CCGC	4 cut(s)	16, 47, 155, 343
SspMI	CTAG	2 cut(s)	198, 278
StyD4I	CCNGG	2 cut(s)	141, 236
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	297, 386, 451
TaqI	TCGA	1 cut(s)	214
TasI	AATT	3 cut(s)	96, 362, 405
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	122, 269
Tru9I	TTAA	2 cut(s)	122, 269
TscAI	CASTG	2 cut(s)	307, 354
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	2 cut(s)	307, 354
VpaK11BI	GGWCC	2 cut(s)	38, 234
XapI	RAATTY	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	198, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.