Rorug06G0031500

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
3756340 .. 3756832
493 bp
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UTR
Exon/CDS
Intron
Rorug06G0031500.1

Sequence Viewer

Length: 312 bp
ATGGAATTCATCAGCTTCCTCCAAGATAACCATGTCGATCTCACTAATGTCAAGAGGTGTGCAATTGATGATGACTATCCTTCAATGAAGAAAACTGAAGGGGAACTAACAAAGCAAAACTCATTTAAGTCGACCCAATCGGATGGCGCAAACACATCAAATGTCGATGACTTGACCGAGAAGGCACCGATCCCCGCCGTTTGTTCGGAAGTTAATGATGGCAGTGCAAACCACCAATGTTCACCATGGGCATGCCCTTGCCTTGTCTACTGGAACTGGAGCCCGAATCGGGTGTTTGCGAGACTACCCTAG

Protein Analysis

103

Amino Acids

11.54

Weight (kDa)

4.77

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccI GTMKAC 2 cut(s) 131, 267
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 1 cut(s) 84
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 234
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 284
BccI CCATC 2 cut(s) 137, 212
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 186, 281
BpmI CTGGAG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 275, 281
Bse8I GATNNNNATC 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 148
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 289
BseNI ACTGG 2 cut(s) 275, 281
BshNI GGYRCC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 37, 189
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 186, 281
BspPI GGATC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 184
BsrI ACTGG 2 cut(s) 275, 281
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 37, 189
BssT1I CCWWGG 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 40, 192
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 2 cut(s) 37, 189
BstNSI RCATGY 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 149
CviAII CATG 3 cut(s) 32, 246, 252
CviJI RGCY 2 cut(s) 15, 282
CviKI_1 RGCY 2 cut(s) 15, 282
DpnI GATC 2 cut(s) 39, 191
DpnII GATC 2 cut(s) 37, 189
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 3 cut(s) 35, 249, 255
FaiI YATR 3 cut(s) 33, 247, 253
FatI CATG 3 cut(s) 31, 245, 251
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 2 cut(s) 131, 267
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 284
FspBI CTAG 1 cut(s) 310
GlaI GCGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 298
HhaI GCGC 1 cut(s) 149
Hin1II CATG 3 cut(s) 35, 249, 255
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 1 cut(s) 286
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 3 cut(s) 132, 242, 268
Hpy188I TCNGA 2 cut(s) 142, 208
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 3 cut(s) 132, 242, 268
HpyAV CCTTC 3 cut(s) 90, 92, 175
HpyCH4V TGCA 2 cut(s) 62, 227
Hsp92II CATG 3 cut(s) 35, 249, 255
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 37, 189
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 2 cut(s) 256, 262
MaeI CTAG 1 cut(s) 310
MalI GATC 2 cut(s) 39, 191
MboI GATC 2 cut(s) 37, 189
MboII GAAGA 1 cut(s) 100
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 5, 63
MnlI CCTC 2 cut(s) 29, 48
MseI TTAA 2 cut(s) 126, 213
MslI CAYNNNNRTG 1 cut(s) 250
MunI CAATTG 1 cut(s) 63
NcoI CCATGG 1 cut(s) 245
NdeII GATC 2 cut(s) 37, 189
NlaIII CATG 3 cut(s) 35, 249, 255
NlaIV GGNNCC 2 cut(s) 186, 281
NspI RCATGY 1 cut(s) 255
PaeI GCATGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 186, 281
RseI CAYNNNNRTG 1 cut(s) 250
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 126, 213
Sau3AI GATC 2 cut(s) 37, 189
SduI GDGCHC 1 cut(s) 284
SetI ASST 2 cut(s) 17, 59
SmiMI CAYNNNNRTG 1 cut(s) 250
SphI GCATGC 1 cut(s) 255
Sse9I AATT 2 cut(s) 5, 63
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 245
TaqI TCGA 3 cut(s) 36, 131, 165
TaqII GACCGA 1 cut(s) 191
TasI AATT 2 cut(s) 5, 63
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 126, 213
Tru9I TTAA 2 cut(s) 126, 213
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 229
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 255
XmiI GTMKAC 2 cut(s) 131, 267
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.