Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

32654029 .. 32657983

Gene Structure 3955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1872 bp

ATGGCTTCCACACCTGGAATTCTTACCGACTGGCCATGGACACCTCTTGGGAGCTTTAAGTACGCGGTGTTAGCTCCTTGGGTGATTCACAGCACATACTCGTTTATGTTTGGAGAAGAAGGCACAGATCTACTTTACATCCTCGTACTTCCATTTCTGTTGTGGAGGATGCTCCACAACCAGATATGGATCTCACTTTCTCGCTATCAAACTGCCAAAGGCAAAGGAATAATCGTCGACAAGGGCCTCGAATTTGAACAAGTCGACAGAGAAAGAAATTGGGATGATCAAATCATATTCAATGGAATGGTGTTTTACATAGTCAGGTTTCTGGCCAGGTGCGTCCTGCCTAGGGCTCAAACTGACCTACCAATTTGGAGGGGAGATGGGTTGGTCATGACGATGCTGCTTCATGCTGGTCCGGTCGAGTATCTCTACTACTGGTTACACAGAGCACTTCACCACCATTTCCTCTACTCTCGCTACCATTCTCATCACCATTCCTCCATTGTCACTGAGCCAATTACTTCTGTGACTCACCCATTTGCGGAGCACATAACATATTTCACGCTCTTCGCAATACCAATGGTGGCAACTCTGTTGATCGGAACAGCTTCCATCACATCCTATTTCGTTTATATTACTTATATTGACTTCATGAACAACTCGGGACACTGCAACTTCGAGTTCATTCCGAACTGGATCTTCTCTCTTTTTCCTCCTCTTAAGTATCTCATATATACTCCCTCGTACCACACTTTGCATCACACTCAATTTCGTACCAATTACTCCCTCTTCATGCCAATCTATGACTACATATATGGTACCATGGACAAGTCTAGTGATACTCTACATGAATCTTCACTCGGGAAAGAGGAATCACCTGATGTGGTTCATCTAACCCATTTAACAACTACCAAGTCCATCTACCGACTCCCACTGGCATTTGCTTCCTTGGCTTCTAATCCACACACTTCATCATGGTACTTATGGTTGTTGTGGCCAGTAACATTAGGGTCTATGATGCTAACTCAGATATTTGGCCGTTCGTTTGTTATTGAGAGGCAGCGTTTTGTTAAATACAGACTACAAACTTGGGTTATTCCAAAATACAGTTTGCAGTACTTGCTCTCATGGCAAAATGAAGCTATAAACAGAGCGATTGAGGATGCCATACTTGAAGCTGAGCAAAAGGGTGTCAAAGTTATAAGTTTAGGTCTCTTTAATCAGGGTGAGGAGCTCAATAGTTATGGTGATATATATGTCCAGAGGAATCCACGGCTGAAAATCAAGGTGGTGGATGGGAGTAGCTTAGCTGTGGCTGTCATCCTTAACAGCATTCCGAAAGGGGCTACCCAGGTTCTCCTTACAGGTAACCTCACAAAGGTTGCTAATGCCCTTGCCTTTTCTTTGTGCCAGAGGGATATCCAGGTAGTTACATTACAGCTGGCTGAGTATTTGAAGCTCACGAAATCATTAAATGCTACAGAGGGTAAGGTGGTTCATGACAGAGGCTATGCTCAAAACATTTGGTTGGTGGGAGATGGGTTGAGTAAAGAAGAACAGTTGAGGGCACCCAAGGGAACAATATTTGTTCCCTTCTCTCAATTCCCACCAAAAAACTTGCGCAAAGACTGTTACTATCACTGTACTCCAGCTATGAAGATCCCCAAGTCTCTTGAGAATGTTTACTCTTGTGAGAACTGGTTGCCAAGGAGGGTGATGAGTGCGTGGCGTATAGCTGGGATAGTGCATGCATTGGAAGGTTGGAATGACCATGAGTGTGGTTATACCATGTCCGATATTGACAAAGTTTGGCAAGCTACTGTTCGACATGGCTTTCTGCCACTGATCCCCACCACCACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

623

Amino Acids

71.78

Weight (kDa)

8.27

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	140 - 276	3.5e-20	Fatty acid hydroxylase
CER1-like_C	PF12076	454 - 616	2.2e-71	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1208
Acc16I	TGCGCA	1 cut(s)	1628
Acc65I	GGTACC	1 cut(s)	824
AccB1I	GGYRCC	2 cut(s)	824, 1573
AccI	GTMKAC	2 cut(s)	237, 264
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	65, 548
AclWI	GGATC	4 cut(s)	197, 710, 1660, 1846
AcoI	YGGCCR	4 cut(s)	32, 333, 1001, 1042
AcsI	RAATTY	2 cut(s)	18, 251
AfaI	GTAC	8 cut(s)	62, 147, 752, 781, 826, 986, 1124, 1651
AfiI	CCNNNNNNNGG	3 cut(s)	352, 547, 1384
AflII	CTTAAG	1 cut(s)	725
AgsI	TTSAA	4 cut(s)	257, 301, 1181, 1462
AjnI	CCWGG	4 cut(s)	13, 335, 1356, 1428
Alw21I	GWGCWC	3 cut(s)	457, 555, 1242
Alw26I	GTCTC	2 cut(s)	1223, 1680
AlwI	GGATC	4 cut(s)	197, 710, 1660, 1846
Ama87I	CYCGRG	2 cut(s)	667, 866
AoxI	GGCC	5 cut(s)	32, 244, 333, 1001, 1042
ApeKI	GCWGC	2 cut(s)	406, 1066
ApoI	RAATTY	2 cut(s)	18, 251
Asp700I	GAANNNNTTC	1 cut(s)	613
Asp718I	GGTACC	1 cut(s)	824
AspA2I	CCTAGG	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	1629
AspS9I	GGNCC	2 cut(s)	244, 419
AsuHPI	GGTGA	8 cut(s)	94, 452, 488, 530, 873, 1244, 1265, 1732
AvaI	CYCGRG	2 cut(s)	667, 866
AvaII	GGWCC	1 cut(s)	419
AvrII	CCTAGG	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	1576
BalI	TGGCCA	3 cut(s)	34, 335, 1003
BanI	GGYRCC	2 cut(s)	824, 1573
BanII	GRGCYC	2 cut(s)	358, 1242
Bbv12I	GWGCWC	3 cut(s)	457, 555, 1242
BbvI	GCAGC	2 cut(s)	393, 1078
BccI	CCATC	5 cut(s)	380, 626, 932, 1295, 1538
BceAI	ACGGC	2 cut(s)	1029, 1295
BciT130I	CCWGG	4 cut(s)	15, 337, 1358, 1430
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	1223, 1680
BfaI	CTAG	2 cut(s)	351, 840
BfmI	CTRYAG	1 cut(s)	1485
BfrI	CTTAAG	1 cut(s)	725
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	2 cut(s)	407, 1067
BlnI	CCTAGG	1 cut(s)	350
BlpI	GCTNAGC	2 cut(s)	1185, 1312
BlsI	GCNGC	2 cut(s)	408, 1068
BmcAI	AGTACT	1 cut(s)	1124
Bme1390I	CCNGG	4 cut(s)	15, 337, 1358, 1430
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	2 cut(s)	667, 866
BmgT120I	GGNCC	2 cut(s)	244, 419
BmiI	GGNNCC	2 cut(s)	826, 1575
BmrFI	CCNGG	4 cut(s)	15, 337, 1358, 1430
BmsI	GCATC	5 cut(s)	159, 393, 772, 1014, 1159
BpmI	CTGGAG	1 cut(s)	1638
Bpu1102I	GCTNAGC	2 cut(s)	1185, 1312
BpuEI	CTTGAG	1 cut(s)	1700
BsaBI	GATNNNNATC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	1223
BsaJI	CCNNGG	9 cut(s)	35, 77, 350, 828, 954, 1277, 1356, 1578, 1712
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 547, 1384
Bse1I	ACTGG	6 cut(s)	35, 446, 704, 945, 1004, 1709
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	4 cut(s)	15, 337, 1358, 1430
BseDI	CCNNGG	9 cut(s)	35, 77, 350, 828, 954, 1277, 1356, 1578, 1712
BseGI	GGATG	7 cut(s)	138, 174, 289, 623, 1174, 1306, 1326
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	3 cut(s)	352, 547, 1384
BseMII	CTCAG	4 cut(s)	507, 1046, 1176, 1443
BseNI	ACTGG	6 cut(s)	35, 446, 704, 945, 1004, 1709
BseRI	GAGGAG	2 cut(s)	711, 1250
BseSI	GKGCMC	1 cut(s)	1576
BseXI	GCAGC	2 cut(s)	393, 1078
BseYI	CCCAGC	1 cut(s)	1742
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	5 cut(s)	34, 246, 335, 1003, 1044
BshNI	GGYRCC	2 cut(s)	824, 1573
BsiEI	CGRYCG	1 cut(s)	426
BsiHKAI	GWGCWC	3 cut(s)	457, 555, 1242
BsiHKCI	CYCGRG	2 cut(s)	667, 866
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	3 cut(s)	352, 547, 1384
BsmAI	GTCTC	2 cut(s)	1223, 1680
BsmFI	GGGAC	1 cut(s)	684
BsmI	GAATGC	1 cut(s)	1338
BsnI	GGCC	5 cut(s)	34, 246, 335, 1003, 1044
Bso31I	GGTCTC	1 cut(s)	1223
BsoBI	CYCGRG	2 cut(s)	667, 866
Bsp1286I	GDGCHC	5 cut(s)	358, 457, 555, 1242, 1576
Bsp143I	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
Bsp1720I	GCTNAGC	2 cut(s)	1185, 1312
Bsp19I	CCATGG	2 cut(s)	35, 828
BspACI	CCGC	2 cut(s)	65, 548
BspANI	GGCC	5 cut(s)	34, 246, 335, 1003, 1044
BspCNI	CTCAG	4 cut(s)	508, 1045, 1177, 1444
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	3 cut(s)	396, 657, 1504
BspLI	GGNNCC	2 cut(s)	826, 1575
BspPI	GGATC	4 cut(s)	197, 710, 1660, 1846
BspQI	GCTCTTC	1 cut(s)	578
BspT107I	GGYRCC	2 cut(s)	824, 1573
BspTI	CTTAAG	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	1223
BsrI	ACTGG	6 cut(s)	35, 446, 704, 945, 1004, 1709
BssECI	CCNNGG	9 cut(s)	35, 77, 350, 828, 954, 1277, 1356, 1578, 1712
BssMI	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
BssT1I	CCWWGG	7 cut(s)	35, 77, 350, 828, 954, 1578, 1712
Bst2UI	CCWGG	4 cut(s)	15, 337, 1358, 1430
Bst4CI	ACNGT	5 cut(s)	1115, 1566, 1637, 1649, 1828
Bst6I	CTCTTC	2 cut(s)	578, 800
BstAFI	CTTAAG	1 cut(s)	725
BstAPI	GCANNNNNTGC	1 cut(s)	1126
BstC8I	GCNNGC	3 cut(s)	1449, 1755, 1821
BstDEI	CTNAG	5 cut(s)	516, 1032, 1185, 1312, 1452
BstDSI	CCRYGG	3 cut(s)	35, 828, 1277
BstEII	GGTNACC	1 cut(s)	1373
BstENI	CCTNNNNNAGG	1 cut(s)	1382
BstF5I	GGATG	7 cut(s)	138, 174, 289, 623, 1174, 1306, 1326
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	1629
BstKTI	GATC	7 cut(s)	130, 192, 289, 606, 705, 1668, 1854
BstMAI	GTCTC	2 cut(s)	1223, 1680
BstMBI	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 956, 1126, 1135
BstNI	CCWGG	4 cut(s)	15, 337, 1358, 1430
BstNSI	RCATGY	1 cut(s)	1757
BstPI	GGTNACC	1 cut(s)	1373
BstSCI	CCNGG	4 cut(s)	13, 335, 1356, 1428
BstSFI	CTRYAG	1 cut(s)	1485
BstSLI	GKGCMC	1 cut(s)	1576
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	393, 1078
BstX2I	RGATCY	4 cut(s)	127, 189, 702, 1665
BstXI	CCANNNNNNTGG	1 cut(s)	1784
BstYI	RGATCY	4 cut(s)	127, 189, 702, 1665
BsuRI	GGCC	5 cut(s)	34, 246, 335, 1003, 1044
BtgI	CCRYGG	3 cut(s)	35, 828, 1277
BtsCI	GGATG	7 cut(s)	138, 174, 289, 623, 1174, 1306, 1326
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	5 cut(s)	513, 673, 938, 1645, 1847
Cac8I	GCNNGC	3 cut(s)	1449, 1755, 1821
CciI	TCATGA	3 cut(s)	396, 657, 1504
CfoI	GCGC	1 cut(s)	1629
Cfr13I	GGNCC	2 cut(s)	244, 419
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	8 cut(s)	61, 146, 751, 780, 825, 985, 1123, 1650
CviQI	GTAC	8 cut(s)	61, 146, 751, 780, 825, 985, 1123, 1650
DdeI	CTNAG	5 cut(s)	516, 1032, 1185, 1312, 1452
DpnI	GATC	7 cut(s)	129, 191, 288, 605, 704, 1667, 1853
DpnII	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
EaeI	YGGCCR	4 cut(s)	32, 333, 1001, 1042
Eam1104I	CTCTTC	2 cut(s)	578, 800
EarI	CTCTTC	2 cut(s)	578, 800
Ecl136II	GAGCTC	1 cut(s)	1240
Eco130I	CCWWGG	7 cut(s)	35, 77, 350, 828, 954, 1578, 1712
Eco24I	GRGCYC	2 cut(s)	358, 1242
Eco31I	GGTCTC	1 cut(s)	1223
Eco32I	GATATC	1 cut(s)	1426
Eco47I	GGWCC	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	1240
Eco88I	CYCGRG	2 cut(s)	667, 866
Eco91I	GGTNACC	1 cut(s)	1373
EcoICRI	GAGCTC	1 cut(s)	1240
EcoNI	CCTNNNNNAGG	1 cut(s)	1382
EcoO109I	RGGNCCY	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	1373
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	4 cut(s)	13, 335, 1356, 1428
EcoRV	GATATC	1 cut(s)	1426
EcoT14I	CCWWGG	7 cut(s)	35, 77, 350, 828, 954, 1578, 1712
EcoT22I	ATGCAT	1 cut(s)	1759
EcoT38I	GRGCYC	2 cut(s)	358, 1242
ErhI	CCWWGG	7 cut(s)	35, 77, 350, 828, 954, 1578, 1712
FaqI	GGGAC	1 cut(s)	684
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	2 cut(s)	237, 264
Fnu4HI	GCNGC	2 cut(s)	407, 1067
FokI	GGATG	7 cut(s)	125, 181, 296, 610, 1181, 1313, 1313
FriOI	GRGCYC	2 cut(s)	358, 1242
Fsp4HI	GCNGC	2 cut(s)	407, 1067
FspBI	CTAG	2 cut(s)	351, 840
FspI	TGCGCA	1 cut(s)	1628
GlaI	GCGC	1 cut(s)	1628
GluI	GCNGC	2 cut(s)	407, 1067
GsaI	CCCAGC	1 cut(s)	1746
GsuI	CTGGAG	1 cut(s)	1638
HaeIII	GGCC	5 cut(s)	34, 246, 335, 1003, 1044
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	1629
Hin6I	GCGC	1 cut(s)	1627
HinP1I	GCGC	1 cut(s)	1627
HincII	GTYRAC	2 cut(s)	238, 265
HindII	GTYRAC	2 cut(s)	238, 265
HinfI	GANTC	6 cut(s)	85, 535, 857, 878, 933, 1273
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	8 cut(s)	94, 452, 488, 530, 873, 1244, 1265, 1732
Hpy166II	GTNNAC	3 cut(s)	238, 265, 1690
Hpy188I	TCNGA	5 cut(s)	608, 696, 1035, 1344, 1801
Hpy188III	TCNNGA	8 cut(s)	397, 658, 669, 868, 1267, 1468, 1505, 1679
Hpy8I	GTNNAC	3 cut(s)	238, 265, 1690
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	113, 1609, 1757
HpyCH4III	ACNGT	5 cut(s)	1115, 1566, 1637, 1649, 1828
HpyCH4V	TGCA	5 cut(s)	678, 763, 1120, 1753, 1757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 956, 1126, 1135
HpyF3I	CTNAG	5 cut(s)	516, 1032, 1185, 1312, 1452
HspAI	GCGC	1 cut(s)	1627
KpnI	GGTACC	1 cut(s)	828
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
LguI	GCTCTTC	1 cut(s)	578
LmnI	GCTCC	5 cut(s)	51, 79, 177, 550, 1237
Lsp1109I	GCAGC	2 cut(s)	393, 1078
LweI	GCATC	5 cut(s)	159, 393, 772, 1014, 1159
MaeI	CTAG	2 cut(s)	351, 840
MaeIII	GTNAC	7 cut(s)	444, 511, 532, 1006, 1373, 1435, 1637
MalI	GATC	7 cut(s)	129, 191, 288, 605, 704, 1667, 1853
MboI	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
MboII	GAAGA	7 cut(s)	128, 565, 697, 787, 852, 1571, 1675
MflI	RGATCY	4 cut(s)	127, 189, 702, 1665
MhlI	GDGCHC	5 cut(s)	358, 457, 555, 1242, 1576
MlsI	TGGCCA	3 cut(s)	34, 335, 1003
MluCI	AATT	8 cut(s)	18, 251, 277, 372, 522, 773, 784, 1607
MluNI	TGGCCA	3 cut(s)	34, 335, 1003
MlyI	GAGTC	2 cut(s)	529, 927
MmeI	TCCRAC	1 cut(s)	1748
Mox20I	TGGCCA	3 cut(s)	34, 335, 1003
Mph1103I	ATGCAT	1 cut(s)	1759
MroXI	GAANNNNTTC	1 cut(s)	613
MscI	TGGCCA	3 cut(s)	34, 335, 1003
MseI	TTAA	8 cut(s)	57, 726, 908, 1077, 1224, 1332, 1478, 1870
MslI	CAYNNNNRTG	2 cut(s)	401, 1782
Msp20I	TGGCCA	3 cut(s)	34, 335, 1003
MspA1I	CMGCKG	1 cut(s)	1447
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	4 cut(s)	15, 337, 1358, 1430
Mva1269I	GAATGC	1 cut(s)	1338
MvaI	CCWGG	4 cut(s)	15, 337, 1358, 1430
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	71, 956, 1126, 1135
NcoI	CCATGG	2 cut(s)	35, 828
NdeII	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
NlaIV	GGNNCC	2 cut(s)	826, 1575
NmuCI	GTSAC	2 cut(s)	511, 532
NsbI	TGCGCA	1 cut(s)	1628
NsiI	ATGCAT	1 cut(s)	1759
NspI	RCATGY	1 cut(s)	1757
PaeI	GCATGC	1 cut(s)	1757
PagI	TCATGA	3 cut(s)	396, 657, 1504
PciSI	GCTCTTC	1 cut(s)	578
PctI	GAATGC	1 cut(s)	1338
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	4 cut(s)	85, 857, 878, 1273
PkrI	GCNGC	2 cut(s)	408, 1068
PleI	GAGTC	2 cut(s)	529, 927
PpsI	GAGTC	2 cut(s)	529, 927
PsiI	TTATAA	1 cut(s)	1208
Psp124BI	GAGCTC	1 cut(s)	1242
Psp6I	CCWGG	4 cut(s)	13, 335, 1356, 1428
PspEI	GGTNACC	1 cut(s)	1373
PspFI	CCCAGC	1 cut(s)	1742
PspGI	CCWGG	4 cut(s)	13, 335, 1356, 1428
PspN4I	GGNNCC	2 cut(s)	826, 1575
PspPI	GGNCC	2 cut(s)	244, 419
PsuI	RGATCY	4 cut(s)	127, 189, 702, 1665
PvuII	CAGCTG	1 cut(s)	1447
RsaI	GTAC	8 cut(s)	62, 147, 752, 781, 826, 986, 1124, 1651
RsaNI	GTAC	8 cut(s)	61, 146, 751, 780, 825, 985, 1123, 1650
RseI	CAYNNNNRTG	2 cut(s)	401, 1782
SacI	GAGCTC	1 cut(s)	1242
SalI	GTCGAC	2 cut(s)	236, 263
SapI	GCTCTTC	1 cut(s)	578
SaqAI	TTAA	8 cut(s)	57, 726, 908, 1077, 1224, 1332, 1478, 1870
SatI	GCNGC	2 cut(s)	407, 1067
Sau3AI	GATC	7 cut(s)	127, 189, 286, 603, 702, 1665, 1851
Sau96I	GGNCC	2 cut(s)	244, 419
ScaI	AGTACT	1 cut(s)	1124
SchI	GAGTC	2 cut(s)	529, 927
ScrFI	CCNGG	4 cut(s)	15, 337, 1358, 1430
SduI	GDGCHC	5 cut(s)	358, 457, 555, 1242, 1576
SfaNI	GCATC	5 cut(s)	159, 393, 772, 1014, 1159
SfcI	CTRYAG	1 cut(s)	1485
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	401, 1782
SmlI	CTYRAG	2 cut(s)	725, 1679
SmoI	CTYRAG	2 cut(s)	725, 1679
SphI	GCATGC	1 cut(s)	1757
Sse9I	AATT	8 cut(s)	18, 251, 277, 372, 522, 773, 784, 1607
SsiI	CCGC	2 cut(s)	65, 548
SspI	AATATT	1 cut(s)	1590
SspMI	CTAG	2 cut(s)	351, 840
SstI	GAGCTC	1 cut(s)	1242
StyD4I	CCNGG	4 cut(s)	13, 335, 1356, 1428
StyI	CCWWGG	7 cut(s)	35, 77, 350, 828, 954, 1578, 1712
TaaI	ACNGT	5 cut(s)	1115, 1566, 1637, 1649, 1828
TaqI	TCGA	6 cut(s)	237, 249, 264, 426, 684, 1831
TasI	AATT	8 cut(s)	18, 251, 277, 372, 522, 773, 784, 1607
TatI	WGTACW	2 cut(s)	1122, 1649
TfiI	GAWTC	4 cut(s)	85, 857, 878, 1273
Tru1I	TTAA	8 cut(s)	57, 726, 908, 1077, 1224, 1332, 1478, 1870
Tru9I	TTAA	8 cut(s)	57, 726, 908, 1077, 1224, 1332, 1478, 1870
TscAI	CASTG	5 cut(s)	520, 680, 945, 1652, 1854
TseFI	GTSAC	2 cut(s)	511, 532
TseI	GCWGC	2 cut(s)	406, 1066
Tsp45I	GTSAC	2 cut(s)	511, 532
TspRI	CASTG	5 cut(s)	520, 680, 945, 1652, 1854
Vha464I	CTTAAG	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	1382
XapI	RAATTY	2 cut(s)	18, 251
XceI	RCATGY	1 cut(s)	1757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	350
XmiI	GTMKAC	2 cut(s)	237, 264
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	2 cut(s)	351, 840
ZrmI	AGTACT	1 cut(s)	1124
Zsp2I	ATGCAT	1 cut(s)	1759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.