Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

8608528 .. 8612313

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1083800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTTACACCTTACTGCATGCATATATACTCGCAATGTTTTTGTTACCTGATCTTGGCTCCTTGGGTCATTCATAGCACATCGTTGTTTATTGTGAATGATGGAAAAGATAGAGATTCAACTTACTTGCTTATGTTTCCACTTATGCTTTGGAGGATGATCCACAACCAGATATGGATCACTCTTTCTCGATATCGAACGGCCAAAGGCAATGGTCGAATTGTTGACAAGGGTCTTGAATTTGATCAGGTTGACAGAGAAAAAAATTGGGATGACCAAATATTGTTCAATGGAGGTTTATCATACCTCGTTAACAGGATGTTTTCAGGTGCTCAAAATATGCCACTTTGGAGAACAGATGGGGTTATTTTTACATTTCTGCTTCATGCTGGTCCAGTGGAGTACTTTAACTATTGGTTTCACAGAGCACTTCACCATCATTACCTCTACTCTCGCCCGTATGAATTTCAACATCAGAATTACACTGTAAAGGTGTTTCATGCCGTGATTCACCCATTTGCGGAGCACGTAGTATATTCCATGATATTCTCAATGCCAATTCTAGCAACTGTCTTCATGGGAACAGTTTCTGTCACATCCATTGCTGGTTATATTACTTACATCGACTTCATGAATAACATGGGACATTGTGTTCGTGGCAGGAATTTCCGTCGGGGATGTCTCCTAGCCGACGAGCACACAGCTCCCCGAGAGGTTGGCGCCGACACTTTGGCTTGGCCTCCTGCAGCAGTAATCTTGCCCGAATGCAGTTTGAAGGATAGTGACTCATCAGCTATTTACTTGTACTGCCACTGTAAAGTACTTTTGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

278

Amino Acids

32.24

Weight (kDa)

7.24

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	719
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	2 cut(s)	154, 185
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	3 cut(s)	239, 464, 664
AcyI	GRCGYC	1 cut(s)	720
AfaI	GTAC	3 cut(s)	404, 806, 822
AfiI	CCNNNNNNNGG	2 cut(s)	55, 520
AgsI	TTSAA	5 cut(s)	120, 239, 289, 470, 775
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	2 cut(s)	704, 794
AluI	AGCT	2 cut(s)	704, 794
Alw21I	GWGCWC	4 cut(s)	334, 430, 528, 699
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	2 cut(s)	154, 185
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	708
AoxI	GGCC	2 cut(s)	201, 737
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	3 cut(s)	239, 464, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	636, 668
Asp700I	GAANNNNTTC	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	425, 503
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	719
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	4 cut(s)	334, 430, 528, 699
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	3 cut(s)	95, 353, 444
BceAI	ACGGC	2 cut(s)	216, 488
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	686
BfaI	CTAG	2 cut(s)	563, 686
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	723
BisI	GCNGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	748
BmcAI	AGTACT	2 cut(s)	404, 822
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	60, 721
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	565
BsaAI	YACGTR	1 cut(s)	529
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	720
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 520
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	3 cut(s)	41, 217, 600
Bse8I	GATNNNNATC	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	5 cut(s)	162, 277, 324, 596, 683
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	55, 520
BseMI	GCAATG	3 cut(s)	41, 217, 600
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	758
BshFI	GGCC	2 cut(s)	203, 739
BshNI	GGYRCC	1 cut(s)	719
BsiHKAI	GWGCWC	4 cut(s)	334, 430, 528, 699
BsiHKCI	CYCGRG	1 cut(s)	708
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	2 cut(s)	55, 520
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	2 cut(s)	203, 739
BsoBI	CYCGRG	1 cut(s)	708
Bsp1286I	GDGCHC	4 cut(s)	334, 430, 528, 699
Bsp143I	GATC	4 cut(s)	51, 159, 177, 244
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	2 cut(s)	203, 739
BspHI	TCATGA	1 cut(s)	630
BspLI	GGNNCC	2 cut(s)	60, 721
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	2 cut(s)	154, 185
BspT107I	GGYRCC	1 cut(s)	719
BsrDI	GCAATG	3 cut(s)	41, 217, 600
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	4 cut(s)	51, 159, 177, 244
BssNI	GRCGYC	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	4 cut(s)	487, 571, 586, 815
BstACI	GRCGYC	1 cut(s)	720
BstBAI	YACGTR	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	20
BstF5I	GGATG	5 cut(s)	162, 277, 324, 596, 683
BstH2I	RGCGCY	1 cut(s)	723
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	4 cut(s)	54, 162, 180, 247
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	4 cut(s)	51, 159, 177, 244
BstNSI	RCATGY	1 cut(s)	22
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	203, 739
BtsCI	GGATG	5 cut(s)	162, 277, 324, 596, 683
BtsIMutI	CAGTG	3 cut(s)	402, 483, 811
Cac8I	GCNNGC	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	630
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	403, 805, 821
CviAII	CATG	7 cut(s)	19, 386, 500, 541, 577, 631, 640
CviJI	RGCY	8 cut(s)	59, 203, 689, 704, 734, 739, 794, 831
CviKI_1	RGCY	8 cut(s)	59, 203, 689, 704, 734, 739, 794, 831
CviQI	GTAC	3 cut(s)	403, 805, 821
DinI	GGCGCC	1 cut(s)	721
DpnI	GATC	4 cut(s)	53, 161, 179, 246
DpnII	GATC	4 cut(s)	51, 159, 177, 244
EaeI	YGGCCR	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	62
EcoT22I	ATGCAT	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	721
EheI	GGCGCC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	7 cut(s)	22, 389, 503, 544, 580, 634, 643
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	7 cut(s)	18, 385, 499, 540, 576, 630, 639
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	5 cut(s)	169, 284, 331, 583, 690
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	2 cut(s)	563, 686
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	1 cut(s)	747
HaeII	RGCGCY	1 cut(s)	723
HaeIII	GGCC	2 cut(s)	203, 739
HhaI	GCGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	720
Hin1II	CATG	7 cut(s)	22, 389, 503, 544, 580, 634, 643
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	3 cut(s)	226, 253, 313
HindII	GTYRAC	3 cut(s)	226, 253, 313
HinfI	GANTC	3 cut(s)	116, 508, 785
HpaI	GTTAAC	1 cut(s)	313
HphI	GGTGA	2 cut(s)	425, 503
Hpy166II	GTNNAC	4 cut(s)	6, 226, 253, 313
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	3 cut(s)	189, 236, 631
Hpy8I	GTNNAC	4 cut(s)	6, 226, 253, 313
Hpy99I	CGWCG	2 cut(s)	675, 695
HpyAV	CCTTC	1 cut(s)	769
HpyCH4III	ACNGT	4 cut(s)	487, 571, 586, 815
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	4 cut(s)	18, 22, 746, 768
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	720
Hsp92II	CATG	7 cut(s)	22, 389, 503, 544, 580, 634, 643
HspAI	GCGC	1 cut(s)	720
KasI	GGCGCC	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	51, 159, 177, 244
LmnI	GCTCC	3 cut(s)	64, 523, 709
Lsp1109I	GCAGC	1 cut(s)	758
MaeI	CTAG	2 cut(s)	563, 686
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	3 cut(s)	44, 592, 782
MalI	GATC	4 cut(s)	53, 161, 179, 246
MboI	GATC	4 cut(s)	51, 159, 177, 244
MboII	GAAGA	1 cut(s)	565
MhlI	GDGCHC	4 cut(s)	334, 430, 528, 699
MluCI	AATT	7 cut(s)	219, 239, 265, 464, 478, 558, 664
Mly113I	GGCGCC	1 cut(s)	720
MlyI	GAGTC	1 cut(s)	779
MnlI	CCTC	6 cut(s)	147, 287, 317, 455, 706, 750
Mph1103I	ATGCAT	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	2 cut(s)	312, 408
Mva1269I	GAATGC	1 cut(s)	770
NarI	GGCGCC	1 cut(s)	720
NdeII	GATC	4 cut(s)	51, 159, 177, 244
NlaIII	CATG	7 cut(s)	22, 389, 503, 544, 580, 634, 643
NlaIV	GGNNCC	2 cut(s)	60, 721
NmuCI	GTSAC	2 cut(s)	592, 782
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	630
PctI	GAATGC	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	116, 508
PkrI	GCNGC	1 cut(s)	748
PleI	GAGTC	1 cut(s)	779
PluTI	GGCGCC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	779
Ppu21I	YACGTR	1 cut(s)	529
PshAI	GACNNNNGTC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	60, 721
PspPI	GGNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	590
RsaI	GTAC	3 cut(s)	404, 806, 822
RsaNI	GTAC	3 cut(s)	403, 805, 821
SaqAI	TTAA	2 cut(s)	312, 408
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	4 cut(s)	51, 159, 177, 244
Sau96I	GGNCC	1 cut(s)	392
ScaI	AGTACT	2 cut(s)	404, 822
SchI	GAGTC	1 cut(s)	779
SduI	GDGCHC	4 cut(s)	334, 430, 528, 699
SfcI	CTRYAG	1 cut(s)	744
SfoI	GGCGCC	1 cut(s)	721
SinI	GGWCC	1 cut(s)	392
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	7 cut(s)	219, 239, 265, 464, 478, 558, 664
SsiI	CCGC	1 cut(s)	521
SspDI	GGCGCC	1 cut(s)	719
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	563, 686
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	4 cut(s)	487, 571, 586, 815
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	4 cut(s)	190, 196, 217, 624
TasI	AATT	7 cut(s)	219, 239, 265, 464, 478, 558, 664
TatI	WGTACW	3 cut(s)	402, 804, 820
TfiI	GAWTC	2 cut(s)	116, 508
Tru1I	TTAA	2 cut(s)	312, 408
Tru9I	TTAA	2 cut(s)	312, 408
TscAI	CASTG	3 cut(s)	402, 490, 818
TseFI	GTSAC	2 cut(s)	592, 782
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	592, 782
TspDTI	ATGAA	7 cut(s)	62, 374, 477, 488, 565, 619, 647
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	3 cut(s)	402, 490, 818
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	3 cut(s)	239, 464, 664
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	2 cut(s)	563, 686
ZrmI	AGTACT	2 cut(s)	404, 822
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.