Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

23017488 .. 23020224

Gene Structure 2737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0168800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAATATGTGCTCATTCGTGACATGCAATCTTACGAGTCAGAGTACAAGATCAAGGTTCGTATATCAAGGGTGTGGAGGGCGAAAAAATTTAACACTGACAAAGATGATGGTCTCCAATGTGTTTTGGTTGATGAACAGGGTGATGCAATACATGCAATTGTCACCGAATCTGATTACCCTGTGGTTCGAAAAAAATTAGAACAAGGGAAAGTTTACCACATCAATAAGTTCTTCACACGAAAGAGCCACAAAAACTACAAAATTCTTGATCATGAGAGCCAAGCCTATTTCAATGGAAAGACTGTCTTTGAACCAGTTGAAGAATGCTTCCCACCAATTCCAGAACATCGATTCTACTTGGTAGAATTTGATCAACTGAGAGAACGCATGAATGACATGACAATTCTGACAGGAGAGGAGCTTAGAATTACGCTTTGGGGTCACATTGCCAGACAAATTGACATAGAAACTATTAAAAAGCTTCCTCCACCAGTGTTGATGGCATTAACCAGTTTGAAAATTAAGGAATATTTGGAACAACCTGCTCCAGCAAATACAAGCAATACCTGCATTTTCATCAATCCAACAATTCCAGAGGCGATGAGATACAGAATTCAGTTTTCAAAGTTGGTTGACAGAGTGCAGGTACGTCCTATTCCATCGAAACAACCAACATCAGAGGAAATTGAAGAAAATGATGTGAGAACAGTCTCTCAATTGAACACACTGGATCCATCATCATACAAGGAACAAATGGTGTACTGCAGCGCTACTATTTCCAGTTTCAGAGTCTACATGACGATCGAAGATGGTGACCATGAAGCAACAGTTACCATAATGGGAAAACATGCAGAACAACTCTTTGGAAGTACCTGTAAAGACTTGGTCGCTAAAAGATCATACCCAACAGCAGAAACATTACCGCAAGAAATTGATAAAACAATGGGTCAAAAACTGCTTTTTCAAATCCAAGTAAAAGATACAAGTGAGCTCATAGTGAGAGCAGTTTTCCCAGATGGGAAGCTCCTGACACCACCACCGCAGAAGGACCCAGCAACTGCAACACCAGATCATCCTCCTTTTGAAAGAAAAAGACTCATTGAAAAGGGTAGGAAACAATTGTTCATATCTGAACCAGAGAAGAAACCTAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

386

Amino Acids

44.77

Weight (kDa)

7.63

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF223	PF02721	4 - 105	7.1e-12	Domain of unknown function DUF223

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	553, 578, 637
AccI	GTMKAC	1 cut(s)	795
AciI	CCGC	2 cut(s)	926, 1043
AclWI	GGATC	2 cut(s)	728, 741
AcsI	RAATTY	4 cut(s)	89, 264, 368, 615
AfaI	GTAC	4 cut(s)	47, 651, 764, 874
AfeI	AGCGCT	1 cut(s)	772
AjuI	GAANNNNNNNTTGG	4 cut(s)	421, 453, 849, 881
AluBI	AGCT	4 cut(s)	424, 484, 994, 1027
AluI	AGCT	4 cut(s)	424, 484, 994, 1027
Alw21I	GWGCWC	2 cut(s)	15, 996
Alw26I	GTCTC	2 cut(s)	119, 718
AlwI	GGATC	2 cut(s)	728, 741
AlwNI	CAGNNNCTG	1 cut(s)	1061
Aor51HI	AGCGCT	1 cut(s)	772
ApeKI	GCWGC	1 cut(s)	768
ApoI	RAATTY	4 cut(s)	89, 264, 368, 615
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	1051
AsuHPI	GGTGA	3 cut(s)	155, 157, 827
AsuII	TTCGAA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	1051
BamHI	GGATCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	996
Bbv12I	GWGCWC	2 cut(s)	15, 996
BbvI	GCAGC	1 cut(s)	780
BccI	CCATC	6 cut(s)	104, 496, 670, 745, 806, 1013
BclI	TGATCA	2 cut(s)	271, 373
BcoDI	GTCTC	2 cut(s)	119, 718
BfmI	CTRYAG	1 cut(s)	766
BfoI	RGCGCY	1 cut(s)	774
BfuAI	ACCTGC	3 cut(s)	553, 578, 637
BisI	GCNGC	1 cut(s)	769
BlsI	GCNGC	1 cut(s)	770
Bme18I	GGWCC	1 cut(s)	1051
BmgT120I	GGNCC	1 cut(s)	1051
BmiI	GGNNCC	2 cut(s)	735, 1053
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	119
Bse1I	ACTGG	5 cut(s)	317, 494, 513, 735, 783
Bse3DI	GCAATG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	352
BseGI	GGATG	1 cut(s)	1075
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	5 cut(s)	317, 494, 513, 735, 783
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	780
BseYI	CCCAGC	1 cut(s)	1054
BsgI	GTGCAG	1 cut(s)	665
Bsh1285I	CGRYCG	1 cut(s)	807
BshVI	ATCGAT	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	807
BsiHKAI	GWGCWC	2 cut(s)	15, 996
BsmAI	GTCTC	2 cut(s)	119, 718
BsmI	GAATGC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	15, 996
Bsp143I	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
BspACI	CCGC	2 cut(s)	926, 1043
BspCNI	CTCAG	1 cut(s)	372
BspDI	ATCGAT	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	735, 1053
BspMAI	CTGCAG	1 cut(s)	770
BspMI	ACCTGC	3 cut(s)	553, 578, 637
BspPI	GGATC	2 cut(s)	728, 741
BspT104I	TTCGAA	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	5 cut(s)	317, 494, 513, 735, 783
BssMI	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
Bst4CI	ACNGT	3 cut(s)	307, 712, 832
BstAPI	GCANNNNNTGC	2 cut(s)	155, 570
BstBI	TTCGAA	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	380, 425
BstEII	GGTNACC	1 cut(s)	815
BstF5I	GGATG	1 cut(s)	1075
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	7 cut(s)	54, 274, 376, 736, 807, 902, 1075
BstMAI	GTCTC	2 cut(s)	119, 718
BstMBI	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
BstMCI	CGRYCG	1 cut(s)	807
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 570
BstNSI	RCATGY	3 cut(s)	28, 158, 854
BstPI	GGTNACC	1 cut(s)	815
BstSFI	CTRYAG	1 cut(s)	766
BstV1I	GCAGC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
Bsu15I	ATCGAT	1 cut(s)	352
BsuTUI	ATCGAT	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	1075
BtsIMutI	CAGTG	3 cut(s)	96, 501, 728
BveI	ACCTGC	3 cut(s)	553, 578, 637
CaiI	CAGNNNCTG	1 cut(s)	1061
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	1051
ClaI	ATCGAT	1 cut(s)	352
Csp6I	GTAC	4 cut(s)	46, 650, 763, 873
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	8 cut(s)	25, 155, 275, 391, 400, 799, 821, 851
CviJI	RGCY	7 cut(s)	249, 282, 287, 424, 484, 994, 1027
CviKI_1	RGCY	7 cut(s)	249, 282, 287, 424, 484, 994, 1027
CviQI	GTAC	4 cut(s)	46, 650, 763, 873
DdeI	CTNAG	2 cut(s)	380, 425
DpnI	GATC	7 cut(s)	53, 273, 375, 735, 806, 901, 1074
DpnII	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
Ecl136II	GAGCTC	1 cut(s)	994
Eco24I	GRGCYC	1 cut(s)	996
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	1051
Eco47III	AGCGCT	1 cut(s)	772
Eco53kI	GAGCTC	1 cut(s)	994
Eco91I	GGTNACC	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	994
EcoO109I	RGGNCCY	1 cut(s)	1051
EcoO65I	GGTNACC	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	996
FaeI	CATG	8 cut(s)	28, 158, 278, 394, 403, 802, 824, 854
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	8 cut(s)	24, 154, 274, 390, 399, 798, 820, 850
FbaI	TGATCA	2 cut(s)	271, 373
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	1 cut(s)	769
FokI	GGATG	1 cut(s)	1062
FriOI	GRGCYC	1 cut(s)	996
Fsp4HI	GCNGC	1 cut(s)	769
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	1 cut(s)	769
GsaI	CCCAGC	1 cut(s)	1058
GsuI	CTGGAG	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	774
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	8 cut(s)	28, 158, 278, 394, 403, 802, 824, 854
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	5 cut(s)	38, 170, 354, 792, 1098
HphI	GGTGA	3 cut(s)	155, 157, 827
Hpy166II	GTNNAC	4 cut(s)	217, 637, 763, 796
Hpy188I	TCNGA	6 cut(s)	43, 175, 411, 682, 791, 1135
Hpy188III	TCNNGA	6 cut(s)	20, 269, 275, 344, 596, 1030
Hpy8I	GTNNAC	4 cut(s)	217, 637, 763, 796
HpyAV	CCTTC	1 cut(s)	1042
HpyCH4III	ACNGT	3 cut(s)	307, 712, 832
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	8 cut(s)	28, 149, 158, 573, 646, 768, 854, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 570
HpyF3I	CTNAG	2 cut(s)	380, 425
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	8 cut(s)	28, 158, 278, 394, 403, 802, 824, 854
HspAI	GCGC	1 cut(s)	771
Ksp22I	TGATCA	2 cut(s)	271, 373
Kzo9I	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
LmnI	GCTCC	3 cut(s)	421, 553, 1032
Lsp1109I	GCAGC	1 cut(s)	780
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	5 cut(s)	20, 163, 443, 815, 832
MalI	GATC	7 cut(s)	53, 273, 375, 735, 806, 901, 1074
MboI	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
MboII	GAAGA	5 cut(s)	226, 335, 704, 821, 1156
MfeI	CAATTG	3 cut(s)	159, 719, 1121
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	2 cut(s)	15, 996
MlyI	GAGTC	3 cut(s)	47, 801, 1092
MmeI	TCCRAC	1 cut(s)	611
MnlI	CCTC	6 cut(s)	72, 412, 498, 592, 676, 1089
MseI	TTAA	4 cut(s)	93, 477, 509, 525
MunI	CAATTG	3 cut(s)	159, 719, 1121
Mva1269I	GAATGC	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	155, 570
NdeII	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
NlaIII	CATG	8 cut(s)	28, 158, 278, 394, 403, 802, 824, 854
NlaIV	GGNNCC	2 cut(s)	735, 1053
NmuCI	GTSAC	4 cut(s)	20, 163, 443, 815
NspI	RCATGY	3 cut(s)	28, 158, 854
NspV	TTCGAA	1 cut(s)	190
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	170, 354
PflFI	GACNNNGTC	1 cut(s)	887
PkrI	GCNGC	1 cut(s)	770
Ple19I	CGATCG	1 cut(s)	807
PleI	GAGTC	3 cut(s)	46, 800, 1092
PpsI	GAGTC	3 cut(s)	46, 800, 1092
PpuMI	RGGWCCY	1 cut(s)	1051
Psp124BI	GAGCTC	1 cut(s)	996
Psp5II	RGGWCCY	1 cut(s)	1051
PspEI	GGTNACC	1 cut(s)	815
PspFI	CCCAGC	1 cut(s)	1054
PspN4I	GGNNCC	2 cut(s)	735, 1053
PspPI	GGNCC	1 cut(s)	1051
PspPPI	RGGWCCY	1 cut(s)	1051
PstI	CTGCAG	1 cut(s)	770
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	887
PvuI	CGATCG	1 cut(s)	807
RsaI	GTAC	4 cut(s)	47, 651, 764, 874
RsaNI	GTAC	4 cut(s)	46, 650, 763, 873
SacI	GAGCTC	1 cut(s)	996
SaqAI	TTAA	4 cut(s)	93, 477, 509, 525
SatI	GCNGC	1 cut(s)	769
Sau3AI	GATC	7 cut(s)	51, 271, 373, 733, 804, 899, 1072
Sau96I	GGNCC	1 cut(s)	1051
SchI	GAGTC	3 cut(s)	47, 801, 1092
SduI	GDGCHC	2 cut(s)	15, 996
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	766
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	1051
SsiI	CCGC	2 cut(s)	926, 1043
SspI	AATATT	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	996
TaaI	ACNGT	3 cut(s)	307, 712, 832
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	4 cut(s)	190, 352, 665, 807
TatI	WGTACW	2 cut(s)	45, 762
TfiI	GAWTC	2 cut(s)	170, 354
Tru1I	TTAA	4 cut(s)	93, 477, 509, 525
Tru9I	TTAA	4 cut(s)	93, 477, 509, 525
TscAI	CASTG	3 cut(s)	103, 501, 735
TseFI	GTSAC	4 cut(s)	20, 163, 443, 815
TseI	GCWGC	1 cut(s)	768
Tsp45I	GTSAC	4 cut(s)	20, 163, 443, 815
TspDTI	ATGAA	5 cut(s)	150, 407, 568, 837, 1117
TspRI	CASTG	3 cut(s)	103, 501, 735
Tth111I	GACNNNGTC	1 cut(s)	887
VpaK11BI	GGWCC	1 cut(s)	1051
XapI	RAATTY	4 cut(s)	89, 264, 368, 615
XceI	RCATGY	3 cut(s)	28, 158, 854
XmiI	GTMKAC	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.