Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000335.1

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

216438 .. 218266

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000335.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggaaaagactagtgatgaactatatgaatcttcactccgaagagacgatgaagctccagatgtgttgcatctaacccatcttacaacacccgactccatttatcaacttccattgggatttgcttccttggcctctaagccgcacacttcaacatggtacatgtggttgatgtggcctgtcacattttggtcgatgatgctcacttggatttatggtcgcacatttgtggttgagaggcagcggtttggtaaactcaaattacaaacttgggcgatcccaaaatacaatttgcaatactccttgccatggcaaaatgaagctattaacagtttgattgaggaagctatacttaaagcagaggaaaagggtgtcaaagttggtgaggagctgaatagatatggtggtctatatagtcggagatatcctcagatgaaagtaaaggtagtagatggaagtagcttagctgtggctgtaatcctcaacagcaaaccaaaagagacaacccaagttgttcttacaggcaaccttacaaaggtcgcttatgcaattgcatttgctttgggccagaggggcattgaggtagctacgttatacaaggatgagtatttgaagctcaccaaatcattaagtgctactaagagtgaggtggttcttgaaaaaggctctgcttcaaagatttggttggtgggagatggattgagtaaagaagaccaactaaatgcgccaaaaggaacaatgtttgttcccttctcccaattccccctaaaaaagttgcgcagggactgcttctaccacttcactccagcaatgaagatccccaagtctcttgagaatgtttactcgtgtgagaactggttgccgagaagggtgatgagcgcatggcgcatagccggaatagtgcatgccttggaaggttggaatgaacatgagtgtggttacgccatgtccgacattgacaaggtttgggaagctacgcttcgacatggctttcagcctctgatccccaatgctactccgaacaaatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

343

Amino Acids

39.24

Weight (kDa)

8.96

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	779
AciI	CCGC	2 cut(s)	143, 244
AclWI	GGATC	3 cut(s)	271, 811, 997
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	309, 535
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	4 cut(s)	153, 613, 659, 675
AhlI	ACTAGT	1 cut(s)	11
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	9 cut(s)	56, 323, 347, 391, 462, 467, 587, 616, 974
AluI	AGCT	9 cut(s)	56, 323, 347, 391, 462, 467, 587, 616, 974
Alw26I	GTCTC	3 cut(s)	39, 494, 831
AlwI	GGATC	3 cut(s)	271, 811, 997
AlwNI	CAGNNNCTG	2 cut(s)	786, 1000
AoxI	GGCC	3 cut(s)	132, 176, 565
ApeKI	GCWGC	1 cut(s)	241
AspLEI	GCGC	4 cut(s)	727, 780, 881, 888
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	3 cut(s)	395, 610, 883
BauI	CACGAG	1 cut(s)	844
BbsI	GAAGAC	1 cut(s)	717
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	87, 446, 689
BcoDI	GTCTC	3 cut(s)	39, 494, 831
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	573
BisI	GCNGC	2 cut(s)	143, 242
BlpI	GCTNAGC	1 cut(s)	463
BlsI	GCNGC	2 cut(s)	144, 243
BmgT120I	GGNCC	1 cut(s)	565
BmsI	GCATC	2 cut(s)	79, 189
BpiI	GAAGAC	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
BpmI	CTGGAG	2 cut(s)	42, 789
Bpu1102I	GCTNAGC	1 cut(s)	463
BpuEI	CTTGAG	1 cut(s)	851
BsaJI	CCNNGG	3 cut(s)	129, 308, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 535
Bse1I	ACTGG	1 cut(s)	860
Bse3DI	GCAATG	1 cut(s)	816
BseDI	CCNNGG	3 cut(s)	129, 308, 909
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	2 cut(s)	309, 535
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	3 cut(s)	134, 178, 567
BsiSI	CCGG	1 cut(s)	894
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	2 cut(s)	309, 535
BsmAI	GTCTC	3 cut(s)	39, 494, 831
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	797
BsnI	GGCC	3 cut(s)	134, 178, 567
Bsp143I	GATC	3 cut(s)	276, 816, 1002
Bsp1720I	GCTNAGC	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	2 cut(s)	143, 244
BspANI	GGCC	3 cut(s)	134, 178, 567
BspCNI	CTCAG	1 cut(s)	442
BspPI	GGATC	3 cut(s)	271, 811, 997
BsrDI	GCAATG	1 cut(s)	816
BsrI	ACTGG	1 cut(s)	860
BssECI	CCNNGG	3 cut(s)	129, 308, 909
BssMI	GATC	3 cut(s)	276, 816, 1002
BssSI	CACGAG	1 cut(s)	844
BssT1I	CCWWGG	3 cut(s)	129, 308, 909
Bst2BI	CACGAG	1 cut(s)	844
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	4 cut(s)	138, 429, 463, 639
BstDSI	CCRYGG	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	607
BstHHI	GCGC	4 cut(s)	727, 780, 881, 888
BstKTI	GATC	3 cut(s)	279, 819, 1005
BstMAI	GTCTC	3 cut(s)	39, 494, 831
BstMBI	GATC	3 cut(s)	276, 816, 1002
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 573, 786, 885
BstNSI	RCATGY	2 cut(s)	166, 908
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	816
BstYI	RGATCY	1 cut(s)	816
BsuRI	GGCC	3 cut(s)	134, 178, 567
BtgI	CCRYGG	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	906
CaiI	CAGNNNCTG	2 cut(s)	786, 1000
CfoI	GCGC	4 cut(s)	727, 780, 881, 888
Cfr13I	GGNCC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	8 cut(s)	156, 163, 309, 882, 905, 929, 946, 986
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	138, 429, 463, 639
DpnI	GATC	3 cut(s)	278, 818, 1004
DpnII	GATC	3 cut(s)	276, 816, 1002
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	129, 308, 909
Eco32I	GATATC	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	425
EcoT14I	CCWWGG	3 cut(s)	129, 308, 909
ErhI	CCWWGG	3 cut(s)	129, 308, 909
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	8 cut(s)	159, 166, 312, 885, 908, 932, 949, 989
FalI	AAGNNNNNCTT	6 cut(s)	336, 368, 501, 533, 963, 995
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	8 cut(s)	155, 162, 308, 881, 904, 928, 945, 985
Fnu4HI	GCNGC	2 cut(s)	143, 242
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	2 cut(s)	143, 242
FspBI	CTAG	1 cut(s)	12
FspI	TGCGCA	1 cut(s)	779
GlaI	GCGC	4 cut(s)	726, 779, 880, 887
GluI	GCNGC	2 cut(s)	143, 242
GsuI	CTGGAG	2 cut(s)	42, 789
HaeIII	GGCC	3 cut(s)	134, 178, 567
HapII	CCGG	1 cut(s)	894
HhaI	GCGC	4 cut(s)	727, 780, 881, 888
Hin1II	CATG	8 cut(s)	159, 166, 312, 885, 908, 932, 949, 989
Hin6I	GCGC	4 cut(s)	725, 778, 879, 886
HinP1I	GCGC	4 cut(s)	725, 778, 879, 886
HinfI	GANTC	2 cut(s)	29, 95
HpaII	CCGG	1 cut(s)	894
HphI	GGTGA	3 cut(s)	395, 610, 883
Hpy166II	GTNNAC	2 cut(s)	254, 841
Hpy188I	TCNGA	6 cut(s)	41, 420, 432, 952, 1002, 1020
Hpy188III	TCNNGA	3 cut(s)	59, 656, 830
Hpy8I	GTNNAC	2 cut(s)	254, 841
HpyAV	CCTTC	3 cut(s)	760, 861, 908
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	5 cut(s)	70, 295, 548, 554, 904
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 573, 786, 885
HpyF3I	CTNAG	4 cut(s)	138, 429, 463, 639
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	8 cut(s)	159, 166, 312, 885, 908, 932, 949, 989
HspAI	GCGC	4 cut(s)	725, 778, 879, 886
Kzo9I	GATC	3 cut(s)	276, 816, 1002
LmnI	GCTCC	2 cut(s)	61, 388
LpnPI	CCDG	8 cut(s)	72, 192, 507, 581, 766, 819, 841, 907
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	79, 189
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	2 cut(s)	181, 938
MalI	GATC	3 cut(s)	278, 818, 1004
MboI	GATC	3 cut(s)	276, 816, 1002
MboII	GAAGA	4 cut(s)	24, 54, 722, 826
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	816
MluCI	AATT	4 cut(s)	260, 289, 549, 758
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	3 cut(s)	398, 899, 975
MseI	TTAA	4 cut(s)	327, 354, 629, 1030
MslI	CAYNNNNRTG	2 cut(s)	227, 933
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	1 cut(s)	894
MunI	CAATTG	1 cut(s)	549
MwoI	GCNNNNNNNGC	4 cut(s)	131, 573, 786, 885
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	276, 816, 1002
NlaIII	CATG	8 cut(s)	159, 166, 312, 885, 908, 932, 949, 989
NmeAIII	GCCGAG	1 cut(s)	888
NmuCI	GTSAC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	779
NspI	RCATGY	2 cut(s)	166, 908
OliI	CACNNNNGTG	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	908
PciI	ACATGT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	948
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	144, 243
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	565
PstNI	CAGNNNCTG	2 cut(s)	786, 1000
PsuI	RGATCY	1 cut(s)	816
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	227, 933
SaqAI	TTAA	4 cut(s)	327, 354, 629, 1030
SatI	GCNGC	2 cut(s)	143, 242
Sau3AI	GATC	3 cut(s)	276, 816, 1002
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	79, 189
SmiMI	CAYNNNNRTG	2 cut(s)	227, 933
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SpeI	ACTAGT	1 cut(s)	11
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	4 cut(s)	260, 289, 549, 758
SsiI	CCGC	2 cut(s)	143, 244
SspI	AATATT	1 cut(s)	1028
SspMI	CTAG	1 cut(s)	12
StyI	CCWWGG	3 cut(s)	129, 308, 909
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	2 cut(s)	194, 982
TasI	AATT	4 cut(s)	260, 289, 549, 758
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	4 cut(s)	327, 354, 629, 1030
Tru9I	TTAA	4 cut(s)	327, 354, 629, 1030
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	7 cut(s)	33, 42, 66, 333, 449, 827, 939
XagI	CCTNNNNNAGG	1 cut(s)	533
XceI	RCATGY	2 cut(s)	166, 908
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.