pycom17g23340

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000337
Physical Location & Seq
Forward (+)
21694731 .. 21695095
365 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGGCGCGGAAACAGATGTGTTGTAGTACCAGTGTAGTACAAGGGTTGAAGCCAGTGCTGATGATGTTGATGGTTCAGACGGCATATACAGGGATGAATATATTTTACAAACTGGTAGCGGAGGTTGGCATGAGTTTAACTGTCCTCGTTGCCTACCGTAACATGTTTTCGGCAGCCCTTATGCTTCCTCTTGCTCTTATATGTGAAAGGAAGAGCAGGCCCAAACTTACCTTAGATATACTGCTTCAAGGTTTTCTCTCCGGATTATTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

92

Amino Acids

10.03

Weight (kDa)

9.66

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 260
AciI CCGC 2 cut(s) 7, 119
AfaI GTAC 2 cut(s) 28, 39
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 49, 248
Aor13HI TCCGGA 1 cut(s) 260
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 260
Bse1I ACTGG 3 cut(s) 30, 53, 117
BseAI TCCGGA 1 cut(s) 260
BseGI GGATG 1 cut(s) 99
BseNI ACTGG 3 cut(s) 30, 53, 117
BseXI GCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 261
BsnI GGCC 1 cut(s) 220
Bsp13I TCCGGA 1 cut(s) 260
BspACI CCGC 2 cut(s) 7, 119
BspANI GGCC 1 cut(s) 220
BspEI TCCGGA 1 cut(s) 260
BspFNI CGCG 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 206
BsrI ACTGG 3 cut(s) 30, 53, 117
Bst4CI ACNGT 2 cut(s) 142, 158
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 166
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 37, 60
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 27, 38
CviAII CATG 2 cut(s) 130, 163
CviJI RGCY 3 cut(s) 52, 176, 220
CviKI_1 RGCY 3 cut(s) 52, 176, 220
CviQI GTAC 2 cut(s) 27, 38
DdeI CTNAG 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
FaeI CATG 2 cut(s) 133, 166
FaiI YATR 9 cut(s) 85, 87, 101, 131, 164, 182, 200, 202, 239
FatI CATG 2 cut(s) 129, 162
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 174
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 261
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 133, 166
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 142, 158
HpyF3I CTNAG 1 cut(s) 232
Hsp92II CATG 2 cut(s) 133, 166
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 260
LguI GCTCTTC 1 cut(s) 206
LpnPI CCDG 5 cut(s) 43, 66, 75, 98, 202
Lsp1109I GCAGC 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 158
MboII GAAGA 1 cut(s) 223
MnlI CCTC 3 cut(s) 115, 155, 198
MroI TCCGGA 1 cut(s) 260
MseI TTAA 1 cut(s) 137
MspI CCGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 7
NlaIII CATG 2 cut(s) 133, 166
NspI RCATGY 1 cut(s) 166
PciI ACATGT 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 175
PscI ACATGT 1 cut(s) 162
PspPI GGNCC 1 cut(s) 219
RsaI GTAC 2 cut(s) 28, 39
RsaNI GTAC 2 cut(s) 27, 38
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 219
SetI ASST 3 cut(s) 126, 233, 253
SsiI CCGC 2 cut(s) 7, 119
TaaI ACNGT 2 cut(s) 142, 158
TatI WGTACW 1 cut(s) 37
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 2 cut(s) 37, 60
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 2 cut(s) 37, 60
XceI RCATGY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.