AT1G21520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000500
Physical Location & Seq
Reverse (-)
7534019 .. 7534927
909 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21520.1

Sequence Viewer

Length: 201 bp
ATGAGCTCCGGAGAACTGAAGCCGTTCAAGAAGAAAGAAGGGAGTGTGATCCCAAAGGAGAGAGAGTTGGTGAAGACTAAAGCCGCCAAAGCCATTTTCTCTTTGTTCCGTCCATCCTGCGACGGTAAACAGAGTTCTCAGCCATCCCGTGACGGTGACGGTGACCATGACGGCAAGCGCGTGTATCCCACTCGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.37

Weight (kDa)

9.72

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 82, 167, 173
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 121, 151
BceAI ACGGC 2 cut(s) 7, 187
BciVI GTATCC 1 cut(s) 195
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
BseAI TCCGGA 1 cut(s) 8
BseGI GGATG 2 cut(s) 113, 143
BseMII CTCAG 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 180
BspPI GGATC 1 cut(s) 43
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 125, 155, 161
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 2 cut(s) 113, 143
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 161
BstUI CGCG 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 80
BsuI GTATCC 1 cut(s) 195
BtsCI GGATG 2 cut(s) 113, 143
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 1 cut(s) 180
CviAII CATG 1 cut(s) 167
CviJI RGCY 5 cut(s) 6, 22, 83, 92, 142
CviKI_1 RGCY 5 cut(s) 6, 22, 83, 92, 142
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 6
EcoO65I GGTNACC 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 170
FaiI YATR 1 cut(s) 168
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 100, 130
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 84
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 84
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HpaII CCGG 1 cut(s) 9
HphI GGTGA 3 cut(s) 82, 167, 173
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 2 cut(s) 9, 28
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 3 cut(s) 125, 155, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 8
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 2 cut(s) 22, 130
MaeIII GTNAC 3 cut(s) 149, 155, 161
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 2 cut(s) 43, 85
MhlI GDGCHC 1 cut(s) 8
MroI TCCGGA 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 23
MspI CCGG 1 cut(s) 9
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 170
NmuCI GTSAC 3 cut(s) 149, 155, 161
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 8
PspEI GGTNACC 1 cut(s) 161
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 8
SetI ASST 1 cut(s) 8
SgeI CNNG 9 cut(s) 21, 40, 129, 159, 161, 179, 187, 191, 193
SsiI CCGC 1 cut(s) 84
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 3 cut(s) 125, 155, 161
TauI GCSGC 1 cut(s) 86
TseFI GTSAC 3 cut(s) 149, 155, 161
Tsp45I GTSAC 3 cut(s) 149, 155, 161
TspGWI ACGGA 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.