FvH4_2g28140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22166563 .. 22167262
700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28140.t1

Sequence Viewer

Length: 309 bp
ATGGCTTCGGAGCTTCATGACCGTGCCGGATCAGAAGTTGCGACAGACCAGCCACCGCTGCTGGCGGAAAAGCCGAATATGGAGCCTAATAGCTTTCTCATGCCCATCAAGAAGAAAGGTGGTAGTTCGAGTCTGTTGCCGGCGAGGAGAAGGTTAGTCAAGACCATGGCATTCCTTTCCATTGTTCAATTCCTTAGCTCAATCTTCTGTGATAATGGAGCCTCTGAACCCGGTTCGGCCACGCCACCGGAAATCCCACATGCCAATATTTCCAAGAAGATCTTCCCAAAGCCGAGCCATGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.03

Weight (kDa)

7.92

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 65
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 237
AgsI TTSAA 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 3 cut(s) 13, 93, 198
AluI AGCT 3 cut(s) 13, 93, 198
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 231
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcnI CCSGG 1 cut(s) 231
BglII AGATCT 1 cut(s) 279
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 84, 220
BmrFI CCNGG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 239
BsiSI CCGG 4 cut(s) 27, 140, 231, 248
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 29, 279
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 2 cut(s) 56, 65
BspANI GGCC 1 cut(s) 239
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 84, 220
BspPI GGATC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 29, 279
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 63, 141
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 165
BstKTI GATC 2 cut(s) 32, 282
BstMBI GATC 2 cut(s) 29, 279
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 63, 141
CciI TCATGA 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 139
CviAII CATG 5 cut(s) 17, 100, 166, 260, 299
DdeI CTNAG 1 cut(s) 194
DpnI GATC 2 cut(s) 31, 281
DpnII GATC 2 cut(s) 29, 279
EaeI YGGCCR 1 cut(s) 237
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 5 cut(s) 20, 103, 169, 263, 302
FaiI YATR 6 cut(s) 18, 80, 101, 167, 261, 300
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 5 cut(s) 16, 99, 165, 259, 298
Fnu4HI GCNGC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 239
HapII CCGG 4 cut(s) 27, 140, 231, 248
Hin1II CATG 5 cut(s) 20, 103, 169, 263, 302
HinfI GANTC 1 cut(s) 130
HpaII CCGG 4 cut(s) 27, 140, 231, 248
Hpy188I TCNGA 3 cut(s) 10, 34, 226
Hpy188III TCNNGA 3 cut(s) 17, 109, 160
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 5 cut(s) 20, 103, 169, 263, 302
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 29, 279
LmnI GCTCC 3 cut(s) 10, 82, 218
LpnPI CCDG 6 cut(s) 40, 47, 62, 153, 244, 261
Lsp1109I GCAGC 1 cut(s) 45
MalI GATC 2 cut(s) 31, 281
MboI GATC 2 cut(s) 29, 279
MboII GAAGA 4 cut(s) 124, 196, 274, 289
MflI RGATCY 1 cut(s) 279
MluCI AATT 1 cut(s) 188
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 2 cut(s) 138, 232
MroNI GCCGGC 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 4 cut(s) 27, 140, 231, 248
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 58
NaeI GCCGGC 1 cut(s) 141
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 165
NdeII GATC 2 cut(s) 29, 279
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 5 cut(s) 20, 103, 169, 263, 302
NlaIV GGNNCC 2 cut(s) 84, 220
NspI RCATGY 1 cut(s) 263
PagI TCATGA 1 cut(s) 16
PctI GAATGC 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 84, 220
PsuI RGATCY 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 29, 279
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 231
SetI ASST 5 cut(s) 15, 95, 121, 155, 200
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 56, 65
SspI AATATT 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 188
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 5
XceI RCATGY 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.