Rroxscaffold_7G00170920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000500
Physical Location & Seq
Reverse (-)
11326784 .. 11329333
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170920.1

Sequence Viewer

Length: 486 bp
ATGAGTTGCTCACTTAGGCGACATGCCAACGAGCAAGACAAGCATGCCCGTTTCGAGGATTGCCTAAGAGCAAGAGCGAGGCCTTGGAGTCGTGACGGTCATCAAGAAGAGAACATGGTAGCTTCGTTGGAGAGAAGAGAACATGGTAGCTTCGTTGAGAGAGAGAGGCCACGAGGCCTAGATGACGAGTCGGAAGCAAAGAGTGAGAGGCAGATCGAGATGGTGTCGAAGCTTCAGAGCCCTACAGGTGCCGAAGTTGTCCCACAGGTGGTGGACAAACTCAAGACGGAGGTTAATTGCTTCAAGCCCAAGAAGGGCTCTGTTTTCCCGGCAGAAAGAAGGCTGGTGAAGACCATGGTGTTCCATTCCATTCTGAATTTCGTGGCCTCTGGTTTCTGTTGCATTAAAGAAGCTAATGAAATCTCTCTTTCGAACCCCAAAATCCCAAATGCCAAAAAATGCGACCATAACCAGATATTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.45

Weight (kDa)

8.78

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 55, 268, 314
AgsI TTSAA 1 cut(s) 304
AluBI AGCT 4 cut(s) 122, 150, 232, 413
AluI AGCT 4 cut(s) 122, 150, 232, 413
AoxI GGCC 4 cut(s) 80, 167, 175, 384
ApoI RAATTY 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 358
AsuII TTCGAA 1 cut(s) 431
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 2 cut(s) 242, 320
BauI CACGAG 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 356
BccI CCATC 1 cut(s) 214
BcnI CCSGG 1 cut(s) 329
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 83, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 268, 314
BseDI CCNNGG 2 cut(s) 83, 354
BseLI CCNNNNNNNGG 3 cut(s) 55, 268, 314
BshFI GGCC 4 cut(s) 82, 169, 177, 386
BshNI GGYRCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 55, 268, 314
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 4 cut(s) 82, 169, 177, 386
Bsp119I TTCGAA 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 242, 320
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 354
BspANI GGCC 4 cut(s) 82, 169, 177, 386
BspLI GGNNCC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 83, 354
BssMI GATC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 83, 354
Bst2BI CACGAG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 102, 130
BstBI TTCGAA 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 14, 65
BstDSI CCRYGG 1 cut(s) 354
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNSI RCATGY 2 cut(s) 26, 47
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 356
BsuRI GGCC 4 cut(s) 82, 169, 177, 386
BtgI CCRYGG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 45
CviAII CATG 5 cut(s) 23, 44, 115, 143, 355
DdeI CTNAG 2 cut(s) 14, 65
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 102, 130
EarI CTCTTC 2 cut(s) 102, 130
Eco130I CCWWGG 2 cut(s) 83, 354
Eco147I AGGCCT 2 cut(s) 82, 177
Eco24I GRGCYC 2 cut(s) 242, 320
Eco57I CTGAAG 1 cut(s) 218
EcoT14I CCWWGG 2 cut(s) 83, 354
EcoT38I GRGCYC 2 cut(s) 242, 320
ErhI CCWWGG 2 cut(s) 83, 354
FaeI CATG 5 cut(s) 26, 47, 118, 146, 358
FaiI YATR 7 cut(s) 24, 45, 116, 144, 356, 468, 484
FaqI GGGAC 1 cut(s) 245
FatI CATG 5 cut(s) 22, 43, 114, 142, 354
FriOI GRGCYC 2 cut(s) 242, 320
FspBI CTAG 1 cut(s) 179
HaeIII GGCC 4 cut(s) 82, 169, 177, 386
HapII CCGG 1 cut(s) 329
Hin1II CATG 5 cut(s) 26, 47, 118, 146, 358
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 88, 188
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 193, 237, 375
Hpy188III TCNNGA 4 cut(s) 92, 104, 217, 283
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 307, 333
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 2 cut(s) 14, 65
Hsp92II CATG 5 cut(s) 26, 47, 118, 146, 358
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 5 cut(s) 231, 251, 329, 342, 375
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 3 cut(s) 119, 147, 361
MhlI GDGCHC 2 cut(s) 242, 320
MluCI AATT 2 cut(s) 295, 376
MlyI GAGTC 2 cut(s) 97, 197
MmeI TCCRAC 2 cut(s) 108, 171
MnlI CCTC 7 cut(s) 49, 72, 159, 167, 201, 283, 397
MseI TTAA 2 cut(s) 294, 405
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 354
NdeII GATC 1 cut(s) 213
NlaIII CATG 5 cut(s) 26, 47, 118, 146, 358
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 2 cut(s) 26, 47
NspV TTCGAA 1 cut(s) 431
PaeI GCATGC 1 cut(s) 47
PceI AGGCCT 2 cut(s) 82, 177
PleI GAGTC 2 cut(s) 96, 196
PpsI GAGTC 2 cut(s) 96, 196
PspN4I GGNNCC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 294, 405
Sau3AI GATC 1 cut(s) 213
SchI GAGTC 2 cut(s) 97, 197
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 2 cut(s) 242, 320
SetI ASST 7 cut(s) 124, 152, 234, 250, 270, 294, 415
SfcI CTRYAG 1 cut(s) 243
SfuI TTCGAA 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SphI GCATGC 1 cut(s) 47
Sse9I AATT 2 cut(s) 295, 376
SseBI AGGCCT 2 cut(s) 82, 177
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 2 cut(s) 82, 177
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 2 cut(s) 83, 354
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 4 cut(s) 54, 216, 227, 431
TasI AATT 2 cut(s) 295, 376
Tru1I TTAA 2 cut(s) 294, 405
Tru9I TTAA 2 cut(s) 294, 405
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 302
XapI RAATTY 1 cut(s) 376
XceI RCATGY 2 cut(s) 26, 47
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.