Prupe.8G206300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000500
Physical Location & Seq
Reverse (-)
19319915 .. 19320775
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G206300.1

Sequence Viewer

Length: 339 bp
ATGGCAGTGAGGGCAAATATTGAAGGGGCAGAGAAGGGGCTGATGAAGATCAAGCTGAAGAACCCAGATGGGAAAAACAAGAAAGAGGCAGAGAAAATGGTGAAGTTGAAGCTGGACACAACAGAGAAAGTGGAGATGAAGAAGATCATGGTCCTGGAAGAGCCACACCAACTCTCATGGTTCAAGCCAAAAGCTGCAAGTGTATTTCCCGCCAAGAGAAAATCAGTGAAACGCATGATTTTTGATCGTTTAGTAGTCTACTTTGGCTCTGTGGTTTCTCACTCTGCTCCTTCCTCATCATCAGCGGTTGGAGTGGCCTCCCAAACCCCACAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.4

Weight (kDa)

10.04

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AciI CCGC 2 cut(s) 210, 305
AcuI CTGAAG 1 cut(s) 77
AgsI TTSAA 3 cut(s) 23, 109, 184
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 3 cut(s) 55, 112, 194
AluI AGCT 3 cut(s) 55, 112, 194
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 155
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 47
BseBI CCWGG 1 cut(s) 155
BseJI GATNNNNATC 1 cut(s) 47
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 317
BsnI GGCC 1 cut(s) 317
Bsp143I GATC 3 cut(s) 48, 144, 244
BspACI CCGC 2 cut(s) 210, 305
BspANI GGCC 1 cut(s) 317
BspQI GCTCTTC 1 cut(s) 153
BssMI GATC 3 cut(s) 48, 144, 244
Bst2UI CCWGG 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 153
BstKTI GATC 3 cut(s) 51, 147, 247
BstMBI GATC 3 cut(s) 48, 144, 244
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 317
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 231
Cfr13I GGNCC 1 cut(s) 151
CviAII CATG 3 cut(s) 148, 177, 235
CviJI RGCY 9 cut(s) 40, 55, 112, 163, 187, 194, 267, 317, 335
CviKI_1 RGCY 9 cut(s) 40, 55, 112, 163, 187, 194, 267, 317, 335
DpnI GATC 3 cut(s) 50, 146, 246
DpnII GATC 3 cut(s) 48, 144, 244
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 151, 180, 238
FaiI YATR 3 cut(s) 149, 178, 236
FatI CATG 3 cut(s) 147, 176, 234
FauI CCCGC 1 cut(s) 217
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 317
Hin1II CATG 3 cut(s) 151, 180, 238
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 17, 28, 300
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 151, 180, 238
Kzo9I GATC 3 cut(s) 48, 144, 244
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 78, 98, 140, 167
Lsp1109I GCAGC 1 cut(s) 181
MalI GATC 3 cut(s) 50, 146, 246
MboI GATC 3 cut(s) 48, 144, 244
MboII GAAGA 5 cut(s) 58, 70, 151, 154, 170
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 4 cut(s) 3, 79, 304, 328
MspA1I CMGCKG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 48, 144, 244
NlaIII CATG 3 cut(s) 151, 180, 238
PciSI GCTCTTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 3 cut(s) 48, 144, 244
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 155
SetI ASST 3 cut(s) 57, 114, 196
SinI GGWCC 1 cut(s) 151
SsiI CCGC 2 cut(s) 210, 305
SspI AATATT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 153
TscAI CASTG 2 cut(s) 12, 231
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 59, 152
TspRI CASTG 2 cut(s) 12, 231
VpaK11BI GGWCC 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.