Rh6AG378700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000500
Physical Location & Seq
Forward (+)
57702396 .. 57702761
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG378700.1

Sequence Viewer

Length: 366 bp
ATGGAGATGGTGTCGAAGAAGCTTGAGGACCCTGCAGGTGCGGCAATTCTCTGGTCCTTGACAGACCCAAAGCCGGTGGGCAAACTCGAGGCGACGAAGGCTAATTGGTGCAAGCCCAAGAAGGGCAGTGTTTTCCCGGTGAAGAGGAGGCTGGTGAAGACCATGGTGTATGATTCCATTGTGAAGTTCGTTGCCTCTGTTTTCTCTTCCTCTGAAGTACCCAATCCCATGATCTCTCTTTCTGCACTCAAAATTCCAAAAGCCAAAATATGCAACCACACTCGGACATACCCACATCCAAGCCCAGAGGCCCCAGACCATGTTGGCAAGCTAGCTCACAATGAGTCGTCGGTAACGAGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.22

Weight (kDa)

9.66

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 26
AciI CCGC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 73, 122
AluBI AGCT 3 cut(s) 22, 331, 335
AluI AGCT 3 cut(s) 22, 331, 335
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 28, 54, 310
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 151, 166
AsuNHI GCTAGC 1 cut(s) 331
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 2 cut(s) 28, 54
BbsI GAAGAC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 137
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 2 cut(s) 28, 54
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 3 cut(s) 28, 54, 310
BmiI GGNNCC 2 cut(s) 30, 312
BmrFI CCNGG 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 122
Bse118I RCCGGY 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 2 cut(s) 73, 122
BseRI GAGGAG 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 74, 137
BslI CCNNNNNNNGG 2 cut(s) 73, 122
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 86
Bsp143I GATC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 30, 312
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 26
BspOI GCTAGC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 162
Bst6I CTCTTC 2 cut(s) 137, 211
BstC8I GCNNGC 3 cut(s) 113, 329, 333
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 41, 98
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 3 cut(s) 113, 329, 333
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 28, 54, 310
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 3 cut(s) 163, 229, 320
CviQI GTAC 1 cut(s) 218
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eam1104I CTCTTC 2 cut(s) 137, 211
EarI CTCTTC 2 cut(s) 137, 211
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 28, 54
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 86
EcoO109I RGGNCCY 2 cut(s) 28, 310
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 166, 232, 323
FaiI YATR 6 cut(s) 164, 171, 230, 271, 289, 321
FatI CATG 3 cut(s) 162, 228, 319
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 332
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 311
HapII CCGG 2 cut(s) 74, 137
Hin1II CATG 3 cut(s) 166, 232, 323
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 173, 344, 358
HpaII CCGG 2 cut(s) 74, 137
HphI GGTGA 2 cut(s) 151, 166
Hpy188I TCNGA 3 cut(s) 214, 285, 365
Hpy99I CGWCG 2 cut(s) 97, 352
HpyAV CCTTC 2 cut(s) 91, 115
HpyCH4V TGCA 4 cut(s) 35, 111, 245, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 98
Hsp92II CATG 3 cut(s) 166, 232, 323
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 8 cut(s) 21, 37, 45, 87, 137, 150, 318, 327
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 4 cut(s) 28, 154, 169, 198
MluCI AATT 3 cut(s) 45, 103, 252
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 7 cut(s) 19, 82, 138, 141, 205, 220, 301
MspI CCGG 2 cut(s) 74, 137
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 41, 98
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 162
NdeII GATC 1 cut(s) 231
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 3 cut(s) 166, 232, 323
NlaIV GGNNCC 2 cut(s) 30, 312
PaeR7I CTCGAG 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 30, 312
PspPI GGNCC 3 cut(s) 28, 54, 310
PspPPI RGGWCCY 1 cut(s) 28
PspXI VCTCGAGB 1 cut(s) 86
PstI CTGCAG 1 cut(s) 37
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 3 cut(s) 28, 54, 310
SbfI CCTGCAGG 1 cut(s) 37
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 137
SdaI CCTGCAGG 1 cut(s) 37
SetI ASST 4 cut(s) 24, 40, 333, 337
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 86
SinI GGWCC 2 cut(s) 28, 54
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 23, 86
SmoI CTYRAG 2 cut(s) 23, 86
Sse8387I CCTGCAGG 1 cut(s) 37
Sse9I AATT 3 cut(s) 45, 103, 252
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 2 cut(s) 14, 87
TasI AATT 3 cut(s) 45, 103, 252
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 28, 54
XapI RAATTY 1 cut(s) 252
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.