pycom05g16510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000500
Physical Location & Seq
Reverse (-)
19759312 .. 19759497
186 bp
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UTR
Exon/CDS
Intron
pycom05g16510.1

Sequence Viewer

Length: 186 bp
ATGAAGAAGAAAGCTTCAGAAGCAGTGGAGGAGGAGCAAATGATGAAGTTGAAGTTGAAGTTGAAGAACCCATCTCAACAAGAACAAATGGTGGAACTCCACAACAAGGCTGAGCCATGGATTTTCAAGCCAAAAGCTGGAAGTGTTTTCCCTGTGAAGAAGAGGTTAGTGAAAATCCCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.13

Weight (kDa)

9.8

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 106, 137
AgsI TTSAA 4 cut(s) 52, 58, 64, 127
AluBI AGCT 2 cut(s) 14, 137
AluI AGCT 2 cut(s) 14, 137
BccI CCATC 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 137
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 2 cut(s) 106, 137
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 44, 47
BslI CCNNNNNNNGG 2 cut(s) 106, 137
Bsp1720I GCTNAGC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
CviAII CATG 1 cut(s) 117
CviJI RGCY 5 cut(s) 14, 110, 115, 130, 137
CviKI_1 RGCY 5 cut(s) 14, 110, 115, 130, 137
DdeI CTNAG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 120
FaiI YATR 1 cut(s) 118
FatI CATG 1 cut(s) 116
Hin1II CATG 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 1 cut(s) 120
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 2 cut(s) 123, 165
MboII GAAGA 5 cut(s) 16, 19, 76, 169, 172
MnlI CCTC 3 cut(s) 22, 25, 156
MwoI GCNNNNNNNGC 1 cut(s) 20
NcoI CCATGG 1 cut(s) 116
NlaIII CATG 1 cut(s) 120
PflMI CCANNNNNTGG 1 cut(s) 137
SetI ASST 3 cut(s) 16, 139, 167
SgeI CNNG 6 cut(s) 92, 118, 129, 139, 150, 164
StyI CCWWGG 1 cut(s) 116
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 17, 59
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.