Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000500

Physical Location & Seq

Genomic Coordinates Forward (+)

57875167 .. 57883638

Gene Structure 8472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG380100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTATTGAAGCTGCAGATGAATACAGGTACAACTGGAAACGATGGAATTATCTGGGCCGAACCCAGGACCATCAAGAAGGCTACCGGTAGTGTTTTCCCGGCGAAGAGAAGGTTGGTGAAGACCATGGTTTCTGCTTCCGTTTTGCACTTCTTAGCCTCTATTTTATGTTCCTCTGGAGAAGATGGTGGGAGGAAACGAGAAATCCCAACTGCCAAAAATTTCAAGCAGTGTGCAACTTCTGATCCTGATGACTGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTGACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGAGTCTAGCTCAGACCCAGCTGAATAGAGTACAGCCAGCTCGGTGGACTCAGCGAAGTTGGAGTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

139

Amino Acids

15.13

Weight (kDa)

10.24

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	71 - 119	3.4e-12	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21520
fragaria_vesca	FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica	Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis	pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis	RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata	RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii	Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa	Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha	Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	2 cut(s)	31, 378
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	4 cut(s)	10, 226, 319, 340
AjnI	CCWGG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	13, 308, 356, 367, 386
AluI	AGCT	5 cut(s)	13, 308, 356, 367, 386
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	13, 308
ApoI	RAATTY	1 cut(s)	220
AsiGI	ACCGGT	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	57, 69
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	3 cut(s)	38, 80, 179
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	14, 309
BlsI	GCNGC	2 cut(s)	15, 310
Bme1390I	CCNGG	2 cut(s)	67, 101
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	2 cut(s)	57, 69
BmrFI	CCNGG	2 cut(s)	67, 101
BpiI	GAAGAC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	65, 126
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	65, 126
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	371, 410
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	363
BshFI	GGCC	1 cut(s)	59
BshTI	ACCGGT	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	87, 101
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	126
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	370, 409
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	65, 126
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	101, 341
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	154, 357, 396
BstDSI	CCRYGG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	65, 99
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	236, 297
Cac8I	GCNNGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	57, 69
Csp6I	GTAC	2 cut(s)	30, 377
CspAI	ACCGGT	1 cut(s)	86
CviAII	CATG	1 cut(s)	127
CviQI	GTAC	2 cut(s)	30, 377
DdeI	CTNAG	3 cut(s)	154, 357, 396
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	101, 341
EarI	CTCTTC	2 cut(s)	101, 341
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	130
FaiI	YATR	2 cut(s)	128, 169
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	14, 309
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	2 cut(s)	14, 309
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	2 cut(s)	14, 309
GsaI	CCCAGC	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	87, 101
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	2 cut(s)	349, 394
HpaII	CCGG	2 cut(s)	87, 101
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	2 cut(s)	244, 360
Hpy188III	TCNNGA	3 cut(s)	76, 177, 248
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	3 cut(s)	73, 105, 334
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	4 cut(s)	16, 148, 236, 311
HpyF3I	CTNAG	3 cut(s)	154, 357, 396
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	244
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	353
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	4 cut(s)	118, 133, 194, 358
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	4 cut(s)	48, 220, 273, 285
MlyI	GAGTC	2 cut(s)	358, 388
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	6 cut(s)	169, 184, 186, 272, 275, 408
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	2 cut(s)	87, 101
MspR9I	CCNGG	2 cut(s)	67, 101
MvaI	CCWGG	1 cut(s)	67
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	130
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	15, 310
PleI	GAGTC	2 cut(s)	357, 388
PpsI	GAGTC	2 cut(s)	357, 388
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	57, 69
PstI	CTGCAG	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	31, 378
RsaNI	GTAC	2 cut(s)	30, 377
SatI	GCNGC	2 cut(s)	14, 309
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	57, 69
SchI	GAGTC	2 cut(s)	358, 388
ScrFI	CCNGG	2 cut(s)	67, 101
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	8 cut(s)	15, 31, 116, 310, 358, 369, 388, 419
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	69
Sse9I	AATT	4 cut(s)	48, 220, 273, 285
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	65, 99
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	257
TasI	AATT	4 cut(s)	48, 220, 273, 285
TatI	WGTACW	1 cut(s)	376
TscAI	CASTG	2 cut(s)	236, 304
TseI	GCWGC	2 cut(s)	13, 308
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	236, 304
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.