Rorug06G0268700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000500
Physical Location & Seq
Reverse (-)
41550573 .. 41555035
4463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0268700.1

Sequence Viewer

Length: 1692 bp
ATGGACGACGACTTCGACATGGCAGCGCCCGGCGGCGAGATGATGGACGACTTTGACCTCCCCGACGAGGGCCCGGTGCTCAAGGTCGGCGAGGAGAAGGAGATCGGAAAGCAGGGCTTGAAGAAGAAGCTCCTCAAGGAAGGTGAAGGCTGGGAAACGCCCAAGAGCGGCGACGAGGTTGAAGTACACTACACTGGGACTTTGCTGGACGGGACTCAGTTCGATTCGAGCCGCGATAGGGAGACGCCGTTCAAGTTCACTCTCGGTCAAGGACAAGTGATTAAAGGATGGGATGAAGGTATTAAAACAATGAAGAAAGGTGAGGATGCCCTTTTCACCATTCCTCCTGATATGGCTTATGGTGCGTCTGGATCTCCCCCAACCATCCCTCCAAATGCCACGTTGCAGTTCAATGTTGAATTGCTATCATGGACCAGTGTGAACGACATAACCAAGGATGGTGGAATTATTAAGAAGGTCTTGAAAGAGGGAGAAAAATGGGAGAACCCAAAAGACCTTGATGAAGTCATAGTTAAATTTGAGGCCCATCTCGAAGATAAAACACTCGTAGCAAAATCTGACACCGTGGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCTGTGAAAACAATGAAGAAGGGCGAAACAGTATTGTTAACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCATCTGGTGATGAGGGTGCTGTTCCTCCAAATGTAACTCTTCATATTACTCTAGAGTTGGTATCGTGGAGAACAGTCTCAGAACTGACAGATGACAAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGTATGAGCGTCCAAATGAAGGAGCTGTTGTTACAGTGAAATTGATTGGAAAGCTGCAAGATGGTAAGGAATTTTTAAAGAAAGGTCATGGTGAAGGAGAAGAACCATTTGAGTTCAAGACTGATGAGGAGCAAGTCATTGACGGGCTTGATAGAGGTGTAGTGACAATGAAGAAGGGTGAGATAGCTCTTGTGATTATAGCCCCTGAGTATGGATTTGGCTCGTCAGAGTCCCAGCAGGAGTTGGCAGTGGTGCCTCCTAATTCAACCCTCTATTATGAGGTCGAGCTTGTATCTTTTGTCAAGGACAAAGAATCATGGGACATGAATACTCCGGAGAAAATTGAGGCTGCTGGTAAGAAGAAGGAAGAAGGGAATGCTTTCTTTAAGGCTGGTAAATATGCAAAAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTACATCGAGTATGATTCGGCTTTTGCTGACGAGGAGAAAAAACAGGCTAAGGTGTTGAAGGTTGCTTGCAATCTCAATGATGCTGCTTGCAAATTGAAGCTGAAAGAGTACAAACAGGCTGAAAAGCTGTGTACCAAGGTGTTGGAGCTCGAGGGTAAGAATGTAAAGGCCCTGTACAGAAGAGCTCAGGCATATATCCAGCTGGCTGATTTGGATTTGGCTGAGCTTGACATCAAGAAAGCTCTTGAAATAGACCCTAACAACAGGGATGTGAAGCTGGAGTACAAAACTTTGAAGGAGAAGATGAAAGAATTCAATAAAAAGGAGGCAAAGTTTTATGGCAACATGTTTGCTAAACTGACTACAAATTCCAATAAGGATGCTGAACCAATGAGTGTAGACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

563

Amino Acids

62.75

Weight (kDa)

5.19

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 51 - 142 2.8e-38 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 168 - 259 3.8e-16 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 284 - 380 6.5e-24 FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19 PF14559 460 - 520 7.1e-06 Tetratricopeptide repeat
TPR_1 PF00515 483 - 516 4.3e-07 Tetratricopeptide repeat
TPR_8 PF13181 484 - 516 5.1e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1099
AccB7I CCANNNNNTGG 1 cut(s) 689
AccBSI CCGCTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 1683
AccII CGCG 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 1180
AciI CCGC 3 cut(s) 33, 168, 232
AclWI GGATC 2 cut(s) 379, 823
AcsI RAATTY 5 cut(s) 536, 590, 917, 1595, 1651
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 6 cut(s) 186, 1286, 1394, 1417, 1460, 1568
AfiI CCNNNNNNNGG 8 cut(s) 67, 68, 167, 238, 689, 719, 866, 1058
AflIII ACRYGT 1 cut(s) 1629
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
Alw21I GWGCWC 3 cut(s) 81, 1434, 1471
Alw26I GTCTC 2 cut(s) 236, 796
AlwI GGATC 2 cut(s) 379, 823
Ama87I CYCGRG 1 cut(s) 1433
Aor13HI TCCGGA 1 cut(s) 1180
AoxI GGCC 3 cut(s) 70, 543, 1452
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 4 cut(s) 23, 901, 1196, 1367
ApoI RAATTY 5 cut(s) 536, 590, 917, 1595, 1651
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp700I GAANNNNTTC 2 cut(s) 1226, 1595
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 5 cut(s) 70, 71, 432, 544, 1453
AsuC2I CCSGG 2 cut(s) 30, 74
AsuHPI GGTGA 7 cut(s) 155, 328, 332, 688, 734, 950, 1037
AvaI CYCGRG 1 cut(s) 1433
AvaII GGWCC 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 1099
BanII GRGCYC 3 cut(s) 74, 1434, 1471
BarI GAAGNNNNNNTAC 2 cut(s) 1550, 1582
Bbv12I GWGCWC 3 cut(s) 81, 1434, 1471
BbvI GCAGC 4 cut(s) 35, 888, 1183, 1354
BccI CCATC 6 cut(s) 37, 282, 392, 452, 555, 902
BceAI ACGGC 1 cut(s) 232
BcnI CCSGG 2 cut(s) 30, 74
BcoDI GTCTC 2 cut(s) 236, 796
BfaI CTAG 2 cut(s) 767, 1690
BfoI RGCGCY 1 cut(s) 29
BisI GCNGC 7 cut(s) 24, 34, 169, 232, 902, 1197, 1368
BlpI GCTNAGC 1 cut(s) 1506
BlsI GCNGC 7 cut(s) 25, 35, 170, 233, 903, 1198, 1369
Bme1390I CCNGG 2 cut(s) 30, 74
Bme18I GGWCC 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 1433
BmgT120I GGNCC 5 cut(s) 70, 71, 432, 544, 1453
BmiI GGNNCC 2 cut(s) 72, 1101
BmrFI CCNGG 2 cut(s) 30, 74
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 4 cut(s) 316, 725, 1354, 1654
BmuI ACTGGG 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 1583
Bpu10I CCTNAGC 2 cut(s) 1332, 1470
Bpu1102I GCTNAGC 1 cut(s) 1506
BpuEI CTTGAG 2 cut(s) 65, 119
BpuMI CCSGG 2 cut(s) 30, 74
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 453, 585, 1419
BsaWI WCCGGW 1 cut(s) 1180
Bsc4I CCNNNNNNNGG 8 cut(s) 67, 68, 167, 238, 689, 719, 866, 1058
Bse1I ACTGG 2 cut(s) 199, 435
BseAI TCCGGA 1 cut(s) 1180
BseDI CCNNGG 3 cut(s) 453, 585, 1419
BseGI GGATG 7 cut(s) 293, 298, 331, 384, 463, 1558, 1669
BseLI CCNNNNNNNGG 8 cut(s) 67, 68, 167, 238, 689, 719, 866, 1058
BseMII CTCAG 5 cut(s) 230, 807, 1044, 1484, 1497
BseNI ACTGG 2 cut(s) 199, 435
BseRI GAGGAG 4 cut(s) 107, 122, 989, 1331
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 4 cut(s) 35, 888, 1183, 1354
BseYI CCCAGC 2 cut(s) 150, 1080
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 72, 545, 1454
BshNI GGYRCC 1 cut(s) 1099
BsiHKAI GWGCWC 3 cut(s) 81, 1434, 1471
BsiHKCI CYCGRG 1 cut(s) 1433
BsiSI CCGG 3 cut(s) 30, 74, 1181
BslFI GGGAC 5 cut(s) 211, 226, 713, 1063, 1181
BslI CCNNNNNNNGG 8 cut(s) 67, 68, 167, 238, 689, 719, 866, 1058
BsmAI GTCTC 2 cut(s) 236, 796
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 5 cut(s) 211, 226, 713, 1063, 1181
BsmI GAATGC 1 cut(s) 1228
BsnI GGCC 3 cut(s) 72, 545, 1454
BsoBI CYCGRG 1 cut(s) 1433
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 4 cut(s) 74, 81, 1434, 1471
Bsp13I TCCGGA 1 cut(s) 1180
Bsp1407I TGTACA 1 cut(s) 1458
Bsp143I GATC 3 cut(s) 102, 371, 828
Bsp1720I GCTNAGC 1 cut(s) 1506
BspACI CCGC 3 cut(s) 33, 168, 232
BspANI GGCC 3 cut(s) 72, 545, 1454
BspCNI CTCAG 5 cut(s) 229, 806, 1045, 1483, 1498
BspEI TCCGGA 1 cut(s) 1180
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 72, 1101
BspPI GGATC 2 cut(s) 379, 823
BspQI GCTCTTC 1 cut(s) 1459
BspT107I GGYRCC 1 cut(s) 1099
BsrBI CCGCTC 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 1458
BsrI ACTGG 2 cut(s) 199, 435
BssECI CCNNGG 3 cut(s) 453, 585, 1419
BssMI GATC 3 cut(s) 102, 371, 828
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 2 cut(s) 453, 1419
Bst4CI ACNGT 6 cut(s) 586, 598, 664, 676, 790, 883
Bst6I CTCTTC 2 cut(s) 759, 1459
BstACI GRCGYC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 1458
BstC8I GCNNGC 4 cut(s) 714, 1351, 1372, 1488
BstDEI CTNAG 6 cut(s) 216, 793, 1053, 1332, 1470, 1506
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 7 cut(s) 293, 298, 331, 384, 463, 1558, 1669
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 3 cut(s) 105, 374, 831
BstMAI GTCTC 2 cut(s) 236, 796
BstMBI GATC 3 cut(s) 102, 371, 828
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 1633
BstSCI CCNGG 2 cut(s) 28, 72
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 4 cut(s) 35, 888, 1183, 1354
BstX2I RGATCY 2 cut(s) 371, 828
BstXI CCANNNNNNTGG 1 cut(s) 1426
BstYI RGATCY 2 cut(s) 371, 828
BsuRI GGCC 3 cut(s) 72, 545, 1454
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 7 cut(s) 293, 298, 331, 384, 463, 1558, 1669
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 5 cut(s) 192, 442, 594, 888, 1101
Cac8I GCNNGC 4 cut(s) 714, 1351, 1372, 1488
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 5 cut(s) 70, 71, 432, 544, 1453
CseI GACGC 3 cut(s) 253, 354, 845
Csp6I GTAC 6 cut(s) 185, 1285, 1393, 1416, 1459, 1567
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 6 cut(s) 19, 429, 935, 1164, 1171, 1630
CviQI GTAC 6 cut(s) 185, 1285, 1393, 1416, 1459, 1567
DdeI CTNAG 6 cut(s) 216, 793, 1053, 1332, 1470, 1506
DpnI GATC 3 cut(s) 104, 373, 830
DpnII GATC 3 cut(s) 102, 371, 828
DraI TTTAAA 1 cut(s) 924
Eam1104I CTCTTC 2 cut(s) 759, 1459
EarI CTCTTC 2 cut(s) 759, 1459
Ecl136II GAGCTC 2 cut(s) 1432, 1469
Eco130I CCWWGG 2 cut(s) 453, 1419
Eco24I GRGCYC 3 cut(s) 74, 1434, 1471
Eco47I GGWCC 1 cut(s) 432
Eco53kI GAGCTC 2 cut(s) 1432, 1469
Eco88I CYCGRG 1 cut(s) 1433
EcoICRI GAGCTC 2 cut(s) 1432, 1469
EcoO109I RGGNCCY 2 cut(s) 70, 1453
EcoRI GAATTC 2 cut(s) 590, 1595
EcoT14I CCWWGG 2 cut(s) 453, 1419
EcoT38I GRGCYC 3 cut(s) 74, 1434, 1471
ErhI CCWWGG 2 cut(s) 453, 1419
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 6 cut(s) 22, 432, 938, 1167, 1174, 1633
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 464, 496
FaqI GGGAC 5 cut(s) 211, 226, 713, 1063, 1181
FatI CATG 6 cut(s) 18, 428, 934, 1163, 1170, 1629
FblI GTMKAC 1 cut(s) 1683
Fnu4HI GCNGC 7 cut(s) 24, 34, 169, 232, 902, 1197, 1368
FokI GGATG 7 cut(s) 300, 305, 338, 371, 470, 1565, 1676
FriOI GRGCYC 3 cut(s) 74, 1434, 1471
Fsp4HI GCNGC 7 cut(s) 24, 34, 169, 232, 902, 1197, 1368
FspBI CTAG 2 cut(s) 767, 1690
GlaI GCGC 1 cut(s) 27
GluI GCNGC 7 cut(s) 24, 34, 169, 232, 902, 1197, 1368
GsaI CCCAGC 2 cut(s) 154, 1084
GsuI CTGGAG 1 cut(s) 1583
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 3 cut(s) 72, 545, 1454
HapII CCGG 3 cut(s) 30, 74, 1181
HgaI GACGC 3 cut(s) 253, 354, 845
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 6 cut(s) 22, 432, 938, 1167, 1174, 1633
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HindIII AAGCTT 1 cut(s) 1254
HinfI GANTC 5 cut(s) 214, 224, 1076, 1160, 1298
HpaI GTTAAC 1 cut(s) 672
HpaII CCGG 3 cut(s) 30, 74, 1181
HphI GGTGA 7 cut(s) 155, 328, 332, 688, 734, 950, 1037
Hpy166II GTNNAC 6 cut(s) 187, 258, 442, 672, 1416, 1684
Hpy188I TCNGA 4 cut(s) 107, 580, 796, 1075
Hpy188III TCNNGA 9 cut(s) 347, 369, 481, 551, 767, 964, 1181, 1519, 1529
Hpy8I GTNNAC 6 cut(s) 187, 258, 442, 672, 1416, 1684
Hpy99I CGWCG 3 cut(s) 11, 68, 176
HpyCH4III ACNGT 6 cut(s) 586, 598, 664, 676, 790, 883
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 7 cut(s) 406, 623, 716, 904, 1250, 1353, 1374
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 6 cut(s) 216, 793, 1053, 1332, 1470, 1506
HpySE526I ACGT 1 cut(s) 401
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 6 cut(s) 22, 432, 938, 1167, 1174, 1633
HspAI GCGC 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 1180
KspAI GTTAAC 1 cut(s) 672
Kzo9I GATC 3 cut(s) 102, 371, 828
LguI GCTCTTC 1 cut(s) 1459
LmnI GCTCC 4 cut(s) 135, 869, 976, 1429
Lsp1109I GCAGC 4 cut(s) 35, 888, 1183, 1354
LweI GCATC 4 cut(s) 316, 725, 1354, 1654
MaeI CTAG 2 cut(s) 767, 1690
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 4 cut(s) 608, 748, 877, 1009
MalI GATC 3 cut(s) 104, 373, 830
MbiI CCGCTC 1 cut(s) 168
MboI GATC 3 cut(s) 102, 371, 828
MflI RGATCY 2 cut(s) 371, 828
MhlI GDGCHC 4 cut(s) 74, 81, 1434, 1471
MlyI GAGTC 2 cut(s) 208, 1085
MmeI TCCRAC 1 cut(s) 1407
MroI TCCGGA 1 cut(s) 1180
MroXI GAANNNNTTC 2 cut(s) 1226, 1595
MseI TTAA 8 cut(s) 282, 303, 471, 534, 671, 822, 923, 1233
MspA1I CMGCKG 1 cut(s) 1486
MspI CCGG 3 cut(s) 30, 74, 1181
MspR9I CCNGG 2 cut(s) 30, 74
Mva1269I GAATGC 1 cut(s) 1228
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 362
NciI CCSGG 2 cut(s) 30, 74
NdeII GATC 3 cut(s) 102, 371, 828
NlaIII CATG 6 cut(s) 22, 432, 938, 1167, 1174, 1633
NlaIV GGNNCC 2 cut(s) 72, 1101
NmuCI GTSAC 1 cut(s) 1009
NspI RCATGY 1 cut(s) 1633
PaeR7I CTCGAG 1 cut(s) 1433
PciI ACATGT 1 cut(s) 1629
PciSI GCTCTTC 1 cut(s) 1459
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 1228
PdmI GAANNNNTTC 2 cut(s) 1226, 1595
PfeI GAWTC 3 cut(s) 224, 1160, 1298
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 7 cut(s) 25, 35, 170, 233, 903, 1198, 1369
PleI GAGTC 2 cut(s) 208, 1084
PpsI GAGTC 2 cut(s) 208, 1084
PscI ACATGT 1 cut(s) 1629
Psp124BI GAGCTC 2 cut(s) 1434, 1471
PspFI CCCAGC 2 cut(s) 150, 1080
PspN4I GGNNCC 2 cut(s) 72, 1101
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 5 cut(s) 70, 71, 432, 544, 1453
PspXI VCTCGAGB 1 cut(s) 1433
PsuI RGATCY 2 cut(s) 371, 828
PvuII CAGCTG 1 cut(s) 1486
RsaI GTAC 6 cut(s) 186, 1286, 1394, 1417, 1460, 1568
RsaNI GTAC 6 cut(s) 185, 1285, 1393, 1416, 1459, 1567
SacI GAGCTC 2 cut(s) 1434, 1471
SapI GCTCTTC 1 cut(s) 1459
SaqAI TTAA 8 cut(s) 282, 303, 471, 534, 671, 822, 923, 1233
SatI GCNGC 7 cut(s) 24, 34, 169, 232, 902, 1197, 1368
Sau3AI GATC 3 cut(s) 102, 371, 828
Sau96I GGNCC 5 cut(s) 70, 71, 432, 544, 1453
SchI GAGTC 2 cut(s) 208, 1085
ScrFI CCNGG 2 cut(s) 30, 74
SduI GDGCHC 4 cut(s) 74, 81, 1434, 1471
SfaNI GCATC 4 cut(s) 316, 725, 1354, 1654
Sfr274I CTCGAG 1 cut(s) 1433
SinI GGWCC 1 cut(s) 432
SlaI CTCGAG 1 cut(s) 1433
SmlI CTYRAG 3 cut(s) 80, 134, 1433
SmoI CTYRAG 3 cut(s) 80, 134, 1433
SsiI CCGC 3 cut(s) 33, 168, 232
SspMI CTAG 2 cut(s) 767, 1690
SstI GAGCTC 2 cut(s) 1434, 1471
StyD4I CCNGG 2 cut(s) 28, 72
StyI CCWWGG 2 cut(s) 453, 1419
TaaI ACNGT 6 cut(s) 586, 598, 664, 676, 790, 883
TaiI ACGT 1 cut(s) 404
TaqI TCGA 7 cut(s) 15, 222, 227, 552, 1131, 1290, 1434
TaqII GACCGA 1 cut(s) 254
TatI WGTACW 5 cut(s) 184, 1284, 1392, 1458, 1566
TauI GCSGC 3 cut(s) 36, 171, 234
TfiI GAWTC 3 cut(s) 224, 1160, 1298
Tru1I TTAA 8 cut(s) 282, 303, 471, 534, 671, 822, 923, 1233
Tru9I TTAA 8 cut(s) 282, 303, 471, 534, 671, 822, 923, 1233
TscAI CASTG 5 cut(s) 199, 442, 601, 888, 1101
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 4 cut(s) 23, 901, 1196, 1367
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 9 cut(s) 309, 326, 537, 662, 746, 879, 1031, 1187, 1604
TspRI CASTG 5 cut(s) 199, 442, 601, 888, 1101
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 432
XapI RAATTY 5 cut(s) 536, 590, 917, 1595, 1651
XbaI TCTAGA 1 cut(s) 766
XceI RCATGY 1 cut(s) 1633
XhoI CTCGAG 1 cut(s) 1433
XmiI GTMKAC 1 cut(s) 1683
XmnI GAANNNNTTC 2 cut(s) 1226, 1595
XspI CTAG 2 cut(s) 767, 1690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.