Prupe.3G116400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000500
Physical Location & Seq
Reverse (-)
9869792 .. 9871668
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G116400.1

Sequence Viewer

Length: 510 bp
ATGGAAGTACTGATATGGAGGTGGAGGAGATTCAAGCCCAAGCCTATAAGTTCCCATGAATGGGAAATGGCAGCAGCAGAGCCACTAACCCAGTTGCCAACGACGAAGGCGTTGAAATACTTGAAGCCAGATGGGGAAGAAGACCTCCTCTGCCCAAAAACAGAGCATAACCCAAAGGAGCCCATGAAGCTGACTTTGAGCCCATCTCAAGATCAAACCAAGGCTGAGCCATGGTTGTTCAAACCAAAACCTAGCAGTGTCTTCCCTGTGAAGAAGAGGTTAGTGAAGAGGATAATGTTTGATCAAATTGTCCAATGCTTTTGCTCTGTTTCAGATTATACTAATAGTCCTCTGTTTCTGTTGCTGGAGCCTCTGAAACCATCACATCATCAAACGGTAACAAGGTCATTAGCAACCACGTTTACCCAAGCCCACCACCACAGATATGGAATGATTTTCTGTTTCTGTTTCTGTTTCTGCTACTGCAGTATTTCTGTTTTCTGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.79

Weight (kDa)

8.98

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 60, 61
AgsI TTSAA 4 cut(s) 34, 115, 124, 241
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 71, 74
BanII GRGCYC 2 cut(s) 183, 203
BbsI GAAGAC 2 cut(s) 147, 253
BbvI GCAGC 2 cut(s) 83, 86
BccI CCATC 3 cut(s) 125, 211, 388
BclI TGATCA 1 cut(s) 301
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 484
BisI GCNGC 2 cut(s) 72, 75
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 2 cut(s) 73, 76
BmcAI AGTACT 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 180, 369
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 147, 253
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpmI CTGGAG 1 cut(s) 386
Bpu1102I GCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 219, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 61
Bse1I ACTGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 219, 230
BseLI CCNNNNNNNGG 2 cut(s) 60, 61
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 40, 137
BseXI GCAGC 2 cut(s) 83, 86
BslI CCNNNNNNNGG 2 cut(s) 60, 61
Bsp1286I GDGCHC 2 cut(s) 183, 203
Bsp143I GATC 2 cut(s) 211, 301
Bsp1720I GCTNAGC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 180, 369
BspMAI CTGCAG 1 cut(s) 488
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 219, 230
BssMI GATC 2 cut(s) 211, 301
BssT1I CCWWGG 2 cut(s) 219, 230
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 2 cut(s) 269, 281
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 230
BstKTI GATC 2 cut(s) 214, 304
BstMBI GATC 2 cut(s) 211, 301
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 83, 86
BstV2I GAAGAC 2 cut(s) 147, 253
BstXI CCANNNNNNTGG 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 56, 184, 231
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 213, 303
DpnII GATC 2 cut(s) 211, 301
Eam1104I CTCTTC 2 cut(s) 269, 281
EarI CTCTTC 2 cut(s) 269, 281
Eco130I CCWWGG 2 cut(s) 219, 230
Eco24I GRGCYC 2 cut(s) 183, 203
EcoT14I CCWWGG 2 cut(s) 219, 230
EcoT38I GRGCYC 2 cut(s) 183, 203
ErhI CCWWGG 2 cut(s) 219, 230
FaeI CATG 3 cut(s) 59, 187, 234
FaiI YATR 8 cut(s) 16, 47, 57, 168, 185, 232, 339, 447
FatI CATG 3 cut(s) 55, 183, 230
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 72, 75
FriOI GRGCYC 2 cut(s) 183, 203
Fsp4HI GCNGC 2 cut(s) 72, 75
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 72, 75
GsuI CTGGAG 1 cut(s) 386
Hin1II CATG 3 cut(s) 59, 187, 234
HinfI GANTC 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 2 cut(s) 334, 375
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 423
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 3 cut(s) 59, 187, 234
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 211, 301
LmnI GCTCC 2 cut(s) 178, 367
LpnPI CCDG 4 cut(s) 104, 141, 279, 350
Lsp1109I GCAGC 2 cut(s) 83, 86
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 397
MalI GATC 2 cut(s) 213, 303
MboI GATC 2 cut(s) 211, 301
MboII GAAGA 6 cut(s) 149, 152, 253, 283, 286, 298
MhlI GDGCHC 2 cut(s) 183, 203
MluCI AATT 1 cut(s) 306
MnlI CCTC 8 cut(s) 12, 18, 155, 158, 270, 282, 360, 381
MseI TTAA 1 cut(s) 508
MslI CAYNNNNRTG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 187
NcoI CCATGG 1 cut(s) 230
NdeII GATC 2 cut(s) 211, 301
NlaIII CATG 3 cut(s) 59, 187, 234
NlaIV GGNNCC 2 cut(s) 180, 369
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 73, 76
PspN4I GGNNCC 2 cut(s) 180, 369
PstI CTGCAG 1 cut(s) 488
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 1 cut(s) 508
SatI GCNGC 2 cut(s) 72, 75
Sau3AI GATC 2 cut(s) 211, 301
ScaI AGTACT 1 cut(s) 9
SduI GDGCHC 2 cut(s) 183, 203
SetI ASST 7 cut(s) 23, 147, 192, 253, 281, 407, 422
SfcI CTRYAG 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 1 cut(s) 306
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 2 cut(s) 219, 230
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 422
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
TscAI CASTG 1 cut(s) 262
TseI GCWGC 2 cut(s) 71, 74
TspDTI ATGAA 2 cut(s) 72, 200
TspRI CASTG 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.