RLG00000011638

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000500
Physical Location & Seq
Reverse (-)
11279479 .. 11280188
710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011638

Sequence Viewer

Length: 507 bp
ATGGAGATGGTGTCAAAGAAGCTTGAGAACCCTACAGGTGCGGCAATTCTTTGGTCCGAGACAGACCCAGAGCCGGTGGGCAAGCTCGAGGCGACGGAGTATAATTGGTGCAAGCCCAAGAAGGGCAGTGTTTTCCCGGCGAAGAGGAAGCTGGTGAAGACCATGGTGTTTGATTCCATTGTGAAATTCATTGCCTCTGTTTTCTCTTCCTCTAAAGTACCCAATCCCATGATTTCTCTTTCTCCACCTAAAATCCCAAAAGCCAAAATATGCAACCACACTCAGATACAACCATATCCAAACCCAGACCATGTTGGCAAGCTAGCTCACAATGAGTCGTCGGTCGTCCAATGGGGACGTGAAAACCAGGGGAAAAGAAGTATTGGGAAGCTCACCGGTTCCAACAGCATCGGAATCAGTCCGATCTTTACTTCCGGCGTCAGCATTCCGGCAAAGGTAGGAAAAGGAGGCCGGCGAGAAGCGGAGGAGATGGGAGTTTTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.28

Weight (kDa)

9.65

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 41, 482
AcsI RAATTY 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 438
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 73, 122
AgeI ACCGGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 359
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 6 cut(s) 22, 85, 151, 322, 326, 391
AluI AGCT 6 cut(s) 22, 85, 151, 322, 326, 391
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 1 cut(s) 469
ApoI RAATTY 1 cut(s) 185
AsiGI ACCGGT 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 166, 385
AsuNHI GCTAGC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 137, 368
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 137, 368
BmsI GCATC 1 cut(s) 417
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 162, 367
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 122
Bse118I RCCGGY 3 cut(s) 73, 395, 471
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 162, 367
BseLI CCNNNNNNNGG 2 cut(s) 73, 122
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 471
BshTI ACCGGT 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 6 cut(s) 74, 137, 396, 435, 449, 472
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 73, 122
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 1 cut(s) 471
BsoBI CYCGRG 1 cut(s) 86
Bsp143I GATC 1 cut(s) 423
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 2 cut(s) 41, 482
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 400
BspOI GCTAGC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 3 cut(s) 73, 395, 471
BssAI RCCGGY 3 cut(s) 73, 395, 471
BssECI CCNNGG 2 cut(s) 162, 367
BssMI GATC 1 cut(s) 423
BssNI GRCGYC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 368
Bst6I CTCTTC 2 cut(s) 137, 211
BstACI GRCGYC 1 cut(s) 438
BstC8I GCNNGC 5 cut(s) 83, 113, 320, 324, 473
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 162
BstKTI GATC 1 cut(s) 426
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 423
BstMCI CGRYCG 1 cut(s) 345
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 135, 366
BstSFI CTRYAG 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 471
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 5 cut(s) 83, 113, 320, 324, 473
Cfr10I RCCGGY 3 cut(s) 73, 395, 471
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 218
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 3 cut(s) 163, 229, 311
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 137, 211
EarI CTCTTC 2 cut(s) 137, 211
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 166, 232, 314
FaiI YATR 6 cut(s) 102, 164, 230, 271, 295, 312
FaqI GGGAC 1 cut(s) 369
FatI CATG 3 cut(s) 162, 228, 310
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 471
HapII CCGG 6 cut(s) 74, 137, 396, 435, 449, 472
HgaI GACGC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 3 cut(s) 166, 232, 314
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 173, 335, 414
HpaII CCGG 6 cut(s) 74, 137, 396, 435, 449, 472
HphI GGTGA 2 cut(s) 166, 385
Hpy188I TCNGA 4 cut(s) 58, 285, 413, 423
Hpy99I CGWCG 2 cut(s) 97, 343
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 2 cut(s) 111, 273
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 358
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 3 cut(s) 166, 232, 314
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 1 cut(s) 423
LweI GCATC 1 cut(s) 417
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 358
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 3 cut(s) 154, 169, 198
MluCI AATT 3 cut(s) 45, 103, 185
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 6 cut(s) 82, 138, 205, 220, 461, 478
MroNI GCCGGC 1 cut(s) 471
MspI CCGG 6 cut(s) 74, 137, 396, 435, 449, 472
MspR9I CCNGG 2 cut(s) 137, 368
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 1 cut(s) 368
NaeI GCCGGC 1 cut(s) 473
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 162
NdeII GATC 1 cut(s) 423
NgoMIV GCCGGC 1 cut(s) 471
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 3 cut(s) 166, 232, 314
NlaIV GGNNCC 1 cut(s) 400
PaeR7I CTCGAG 1 cut(s) 86
PctI GAATGC 1 cut(s) 444
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 173, 414
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 54
PspXI VCTCGAGB 1 cut(s) 86
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 423
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 137, 368
SfaNI GCATC 1 cut(s) 417
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 86
SinI GGWCC 1 cut(s) 54
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 23, 86
SmoI CTYRAG 2 cut(s) 23, 86
Sse9I AATT 3 cut(s) 45, 103, 185
SsiI CCGC 2 cut(s) 41, 482
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 135, 366
StyI CCWWGG 1 cut(s) 162
TaiI ACGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 87
TaqII GACCGA 1 cut(s) 331
TasI AATT 3 cut(s) 45, 103, 185
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 173, 414
TscAI CASTG 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.