FvH4_2g28211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22190962 .. 22191476
515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28211.t1

Sequence Viewer

Length: 297 bp
ATGGCGTCGAAGCTTCATAGCCATGTTGGCGAGAAAGCTGTGCGGGCTGTGATGGATCAGCCGTCGCCGACGAAGCCTAACAAGAAGAAAGGTGGCAGCCTCAGTTTGGTGCCGGAAAAGAGAAAGCTGGTCAAGACCATGGCTTTTCTTTCCATTGTTAAGTTCGTCGGCTCCATTTTCTGTGCCTGTGGAGGCAACCATACCAACTCCGCCGATTCCACGTCCAAAATCCCAAGTGCCAGGAATTCCAAGCAGACTGTCCCAGAGCCGCACGGCTTGACTTCTCAGGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.4

Weight (kDa)

10.02

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 3 cut(s) 43, 210, 269
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 106
AjiI CACGTC 1 cut(s) 222
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 3 cut(s) 13, 38, 127
AluI AGCT 3 cut(s) 13, 38, 127
AlwI GGATC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 244
BanI GGYRCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 46
BceAI ACGGC 2 cut(s) 46, 289
BciT130I CCWGG 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 27
BisI GCNGC 2 cut(s) 97, 269
BlsI GCNGC 2 cut(s) 98, 270
Bme1390I CCNGG 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 111, 172
BmrFI CCNGG 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 3 cut(s) 43, 210, 269
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 111, 172
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 101, 285
BstDSI CCRYGG 1 cut(s) 138
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 27, 44, 73
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 45
CviAII CATG 2 cut(s) 23, 139
DdeI CTNAG 2 cut(s) 101, 285
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 26, 142
FaiI YATR 5 cut(s) 18, 24, 140, 201, 295
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 22, 138
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 97, 269
Fsp4HI GCNGC 2 cut(s) 97, 269
GluI GCNGC 2 cut(s) 97, 269
HapII CCGG 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 26, 142
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 133, 287
Hpy99I CGWCG 4 cut(s) 10, 67, 73, 170
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 44, 73
HpyF3I CTNAG 2 cut(s) 101, 285
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 26, 142
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 113, 126, 199, 226, 253, 272, 276
Lsp1109I GCAGC 1 cut(s) 108
MaeII ACGT 1 cut(s) 221
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 97
MluCI AATT 1 cut(s) 244
MnlI CCTC 3 cut(s) 110, 185, 283
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 27, 44, 73
NcoI CCATGG 1 cut(s) 138
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 26, 142
NlaIV GGNNCC 2 cut(s) 111, 172
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 2 cut(s) 98, 270
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 111, 172
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 97, 269
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 241
SetI ASST 5 cut(s) 15, 40, 94, 129, 224
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 244
SsiI CCGC 3 cut(s) 43, 210, 269
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 244
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 5
XapI RAATTY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.