Rroxscaffold_7G00170950

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000500
Physical Location & Seq
Forward (+)
11350090 .. 11366990
16901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170950.1

Sequence Viewer

Length: 987 bp
ATGGCTGCAAGAGAAACAGGGGCCCTGAAGGAAGCTAAAGACAAATTAGAAAAGTGTGTGGAAGAACCTGACGTACTGAAAGGTTTGTCTTCCATATTGCTAGTGCTATTAATTGTGGCAACGGTGAAAACAAGGCAGGTGGGAGGACATTTTTTGTTTGGCTGTGCAACTTGGCGGCCCCTTGATCGTGAAAGTAGATGCTTCATGTACCCTTCTCAGAGATTGTTCCAGAGGATGGTTCAAGAAAGTCAAATTGAAAGCTTACTTCAGAAGGCAAAAGGTTTGAAGAAGAAAAACAATTGTAAAGGTCGCACAAAACGCCCTAAGGCTTGGCATGAGAATATAGGCAAGGGAAAGAAAAAATTTTCTAGGAAAGATAATTCAATTCAAGAATCGGATAAGGATCAAGAAGCTCAACCATCAAGAAAGAGGAATAAGAAATTGTCTAGTAAGGATCAATCGGTACCTCAACAATCCCAGGATCAAACTCAACCATCAAGAAAGAGAAATACAAGATCGTCTAATAAGGATCAATCATTACCTCAAGCATCTCGGGCTGTGCCTTTTAGGTGTGACCAAATTGGTTCTTTTTCACTTCCGTTTCGTGTGCTAAAAACAAAAGTGCAAAAGTATTTGGATGTGCGCGCACTAGAATTCAATGATATGATGGCAGAAATGGCGTCGGAGCTTCAGAAAAATGCCGGAGCGGAAATTACGACAGATCTGCCACCGCCGCCGGTGGAAAAGCCCAATATGGAACCTAATAGCTCTCTCAAACCCACCAAGAGGAAAGGTGGTAGTCTGTTGCCGGCGAAGAGAAGGTTAGTCAAGACCATGGCATTTCTTTCCGTTGTTCAATTCTTTAGCTCAATCTTCTGTGCCCCCGGCGGCCCCGAACCCCGTTCAGCCCGTTCCACGCCACCCGAAATAATCCCACACGCCAAGATTTCCAAACAGATTTTCCCAGAGCTGAGCCAGGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

328

Amino Acids

36.98

Weight (kDa)

10.05

Isoelectric Point (pI)

63.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
Acc65I GGTACC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 463
AccB7I CCANNNNNTGG 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 707
AccII CGCG 1 cut(s) 645
AciI CCGC 5 cut(s) 175, 707, 731, 734, 888
AclWI GGATC 4 cut(s) 411, 462, 489, 537
AcsI RAATTY 2 cut(s) 362, 653
AcuI CTGAAG 3 cut(s) 47, 251, 674
AcyI GRCGYC 1 cut(s) 680
AfaI GTAC 3 cut(s) 75, 209, 465
AfiI CCNNNNNNNGG 2 cut(s) 235, 786
AgsI TTSAA 7 cut(s) 242, 257, 286, 384, 389, 658, 857
AjnI CCWGG 2 cut(s) 477, 975
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
AluBI AGCT 7 cut(s) 35, 261, 413, 688, 768, 867, 970
AluI AGCT 7 cut(s) 35, 261, 413, 688, 768, 867, 970
AlwI GGATC 4 cut(s) 411, 462, 489, 537
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 3 cut(s) 21, 176, 889
ApaI GGGCCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 362, 653
AseI ATTAAT 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 463
AspLEI GCGC 2 cut(s) 645, 647
AspS9I GGNCC 4 cut(s) 21, 22, 177, 890
AsuC2I CCSGG 1 cut(s) 885
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 552
AxyI CCTNAGG 1 cut(s) 324
BaeGI GKGCMC 2 cut(s) 25, 883
BanI GGYRCC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 81
BccI CCATC 4 cut(s) 229, 427, 502, 661
BcgI CGANNNNNNTGC 2 cut(s) 706, 740
BciT130I CCWGG 2 cut(s) 479, 977
BcnI CCSGG 1 cut(s) 885
BfaI CTAG 4 cut(s) 101, 369, 447, 650
BfuAI ACCTGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 721
BisI GCNGC 4 cut(s) 6, 176, 734, 889
BlpI GCTNAGC 1 cut(s) 971
BlsI GCNGC 4 cut(s) 7, 177, 735, 890
Bme1390I CCNGG 3 cut(s) 479, 885, 977
BmeT110I CYCGRG 1 cut(s) 552
BmgT120I GGNCC 4 cut(s) 21, 22, 177, 890
BmiI GGNNCC 6 cut(s) 22, 23, 179, 465, 759, 892
BmrFI CCNGG 3 cut(s) 479, 885, 977
BmsI GCATC 2 cut(s) 188, 557
BpiI GAAGAC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 885
BsaBI GATNNNNATC 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 680
BsaJI CCNNGG 3 cut(s) 477, 834, 883
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 786
Bse118I RCCGGY 2 cut(s) 736, 808
Bse21I CCTNAGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 2 cut(s) 479, 977
BseDI CCNNGG 3 cut(s) 477, 834, 883
BseGI GGATG 2 cut(s) 240, 643
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 235, 786
BseMII CTCAG 2 cut(s) 230, 962
BsePI GCGCGC 1 cut(s) 643
BseSI GKGCMC 2 cut(s) 25, 883
Bsh1236I CGCG 1 cut(s) 645
BshFI GGCC 3 cut(s) 23, 178, 891
BshNI GGYRCC 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 4 cut(s) 702, 737, 809, 885
BslI CCNNNNNNNGG 2 cut(s) 235, 786
BsnI GGCC 3 cut(s) 23, 178, 891
BsoBI CYCGRG 1 cut(s) 552
Bsp120I GGGCCC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 25, 883
Bsp143I GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
Bsp1720I GCTNAGC 1 cut(s) 971
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 5 cut(s) 175, 707, 731, 734, 888
BspANI GGCC 3 cut(s) 23, 178, 891
BspCNI CTCAG 2 cut(s) 229, 963
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 6 cut(s) 22, 23, 179, 465, 759, 892
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 4 cut(s) 411, 462, 489, 537
BspT107I GGYRCC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 707
BsrFI RCCGGY 2 cut(s) 736, 808
BssAI RCCGGY 2 cut(s) 736, 808
BssECI CCNNGG 3 cut(s) 477, 834, 883
BssHII GCGCGC 1 cut(s) 643
BssMI GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
BssNI GRCGYC 1 cut(s) 680
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 479, 977
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 809
BstACI GRCGYC 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 645, 810
BstDEI CTNAG 3 cut(s) 216, 324, 971
BstDSI CCRYGG 1 cut(s) 834
BstF5I GGATG 2 cut(s) 240, 643
BstFNI CGCG 1 cut(s) 645
BstHHI GCGC 2 cut(s) 645, 647
BstKTI GATC 7 cut(s) 187, 406, 457, 484, 518, 532, 724
BstMBI GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
BstMWI GCNNNNNNNGC 4 cut(s) 318, 554, 677, 733
BstNI CCWGG 2 cut(s) 479, 977
BstSCI CCNGG 3 cut(s) 477, 883, 975
BstSLI GKGCMC 2 cut(s) 25, 883
BstUI CGCG 1 cut(s) 645
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 3 cut(s) 23, 178, 891
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 2 cut(s) 240, 643
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 645, 810
CfoI GCGC 2 cut(s) 645, 647
Cfr10I RCCGGY 2 cut(s) 736, 808
Cfr13I GGNCC 4 cut(s) 21, 22, 177, 890
CseI GACGC 1 cut(s) 669
Csp6I GTAC 3 cut(s) 74, 208, 464
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 3 cut(s) 205, 335, 835
CviQI GTAC 3 cut(s) 74, 208, 464
DdeI CTNAG 3 cut(s) 216, 324, 971
DpnI GATC 7 cut(s) 186, 405, 456, 483, 517, 531, 723
DpnII GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
Eam1104I CTCTTC 1 cut(s) 809
EarI CTCTTC 1 cut(s) 809
Eco130I CCWWGG 1 cut(s) 834
Eco24I GRGCYC 1 cut(s) 25
Eco57I CTGAAG 3 cut(s) 47, 251, 674
Eco81I CCTNAGG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 552
EcoO109I RGGNCCY 2 cut(s) 21, 22
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 477, 975
EcoT14I CCWWGG 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 3 cut(s) 208, 338, 838
FaiI YATR 7 cut(s) 95, 206, 336, 344, 665, 755, 836
FatI CATG 3 cut(s) 204, 334, 834
Fnu4HI GCNGC 4 cut(s) 6, 176, 734, 889
FokI GGATG 2 cut(s) 247, 650
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 4 cut(s) 6, 176, 734, 889
FspBI CTAG 4 cut(s) 101, 369, 447, 650
GlaI GCGC 2 cut(s) 644, 646
GluI GCNGC 4 cut(s) 6, 176, 734, 889
HaeIII GGCC 3 cut(s) 23, 178, 891
HapII CCGG 4 cut(s) 702, 737, 809, 885
HgaI GACGC 1 cut(s) 669
HhaI GCGC 2 cut(s) 645, 647
Hin1I GRCGYC 1 cut(s) 680
Hin1II CATG 3 cut(s) 208, 338, 838
Hin6I GCGC 2 cut(s) 643, 645
HinP1I GCGC 2 cut(s) 643, 645
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 1 cut(s) 392
HpaII CCGG 4 cut(s) 702, 737, 809, 885
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 5 cut(s) 219, 270, 397, 685, 693
Hpy188III TCNNGA 8 cut(s) 188, 229, 242, 389, 407, 423, 498, 829
Hpy99I CGWCG 1 cut(s) 685
HpyAV CCTTC 4 cut(s) 22, 222, 265, 813
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 8, 167, 625
HpyF10VI GCNNNNNNNGC 4 cut(s) 318, 554, 677, 733
HpyF3I CTNAG 3 cut(s) 216, 324, 971
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 680
Hsp92II CATG 3 cut(s) 208, 338, 838
HspAI GCGC 2 cut(s) 643, 645
KpnI GGTACC 1 cut(s) 467
KroI GCCGGC 1 cut(s) 808
KroNI GCCGGC 1 cut(s) 810
Kzo9I GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
LmnI GCTCC 2 cut(s) 685, 704
LweI GCATC 2 cut(s) 188, 557
MaeI CTAG 4 cut(s) 101, 369, 447, 650
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 572
MalI GATC 7 cut(s) 186, 405, 456, 483, 517, 531, 723
MbiI CCGCTC 1 cut(s) 707
MboI GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
MboII GAAGA 6 cut(s) 74, 81, 298, 301, 826, 865
MfeI CAATTG 1 cut(s) 298
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 2 cut(s) 25, 883
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 6 cut(s) 137, 225, 423, 477, 552, 780
MroNI GCCGGC 1 cut(s) 808
MseI TTAA 2 cut(s) 110, 985
MspI CCGG 4 cut(s) 702, 737, 809, 885
MspR9I CCNGG 3 cut(s) 479, 885, 977
MunI CAATTG 1 cut(s) 298
MvaI CCWGG 2 cut(s) 479, 977
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 4 cut(s) 318, 554, 677, 733
NaeI GCCGGC 1 cut(s) 810
NciI CCSGG 1 cut(s) 885
NcoI CCATGG 1 cut(s) 834
NdeII GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
NgoMIV GCCGGC 1 cut(s) 808
NlaIII CATG 3 cut(s) 208, 338, 838
NlaIV GGNNCC 6 cut(s) 22, 23, 179, 465, 759, 892
NmuCI GTSAC 1 cut(s) 572
PaqCI CACCTGC 1 cut(s) 127
PauI GCGCGC 1 cut(s) 643
PdiI GCCGGC 1 cut(s) 810
PfeI GAWTC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 4 cut(s) 7, 177, 735, 890
PshBI ATTAAT 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 477, 975
PspGI CCWGG 2 cut(s) 477, 975
PspN4I GGNNCC 6 cut(s) 22, 23, 179, 465, 759, 892
PspOMI GGGCCC 1 cut(s) 21
PspPI GGNCC 4 cut(s) 21, 22, 177, 890
PsrI GAACNNNNNNTAC 2 cut(s) 57, 89
PsuI RGATCY 1 cut(s) 721
PteI GCGCGC 1 cut(s) 643
RsaI GTAC 3 cut(s) 75, 209, 465
RsaNI GTAC 3 cut(s) 74, 208, 464
SaqAI TTAA 2 cut(s) 110, 985
SatI GCNGC 4 cut(s) 6, 176, 734, 889
Sau3AI GATC 7 cut(s) 184, 403, 454, 481, 515, 529, 721
Sau96I GGNCC 4 cut(s) 21, 22, 177, 890
ScrFI CCNGG 3 cut(s) 479, 885, 977
SduI GDGCHC 2 cut(s) 25, 883
SfaNI GCATC 2 cut(s) 188, 557
SgrAI CRCCGGYG 1 cut(s) 736
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
SsiI CCGC 5 cut(s) 175, 707, 731, 734, 888
SspMI CTAG 4 cut(s) 101, 369, 447, 650
StyD4I CCNGG 3 cut(s) 477, 883, 975
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 75
TauI GCSGC 3 cut(s) 178, 736, 891
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 110, 985
Tru9I TTAA 2 cut(s) 110, 985
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 1 cut(s) 193
TspGWI ACGGA 2 cut(s) 588, 838
Van91I CCANNNNNTGG 1 cut(s) 235
VspI ATTAAT 1 cut(s) 110
XapI RAATTY 2 cut(s) 362, 653
XspI CTAG 4 cut(s) 101, 369, 447, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.