Rh6AG379600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000500
Physical Location & Seq
Forward (+)
57820427 .. 57821446
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG379600.1

Sequence Viewer

Length: 339 bp
ATGGTGTCGAAGCTTCGGAACCCTACAGGTGCGAAAGTTGTCCAACCGGTGGTGGCGAAGCTCCGGACAACGCCACAGGTGCTGGAAAAACTCAAGACGGAGGCTAATTGTTTCAAGCCCAAAAAGGGCTCTGTTTTCCCGACAAAAAGAAGGCTGGTGAAGACCATGGTGTTCCATTCCATTCTGAAATTCGTCGCCTCTGGTTTCTGTTCCATTAAAGAAGCCAATCCCATTTCACTTTCACAATCACACCCCAAAATCCCAAATGCTAAAAAATGCAACCAGAGCCAGATATTCCCCAACCTTGATGAACAGTTGGTCATACATCATGGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

10.31

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccIII TCCGGA 1 cut(s) 63
AcsI RAATTY 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 49, 125
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 2 cut(s) 13, 61
AluI AGCT 2 cut(s) 13, 61
AlwNI CAGNNNCTG 1 cut(s) 82
Aor13HI TCCGGA 1 cut(s) 63
ApoI RAATTY 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 169
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 2 cut(s) 46, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 125
Bse118I RCCGGY 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 49, 125
BshTI ACCGGT 1 cut(s) 46
BsiSI CCGG 2 cut(s) 47, 64
BslI CCNNNNNNNGG 2 cut(s) 49, 125
Bsp1286I GDGCHC 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 165
BspEI TCCGGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 79, 285
BstSFI CTRYAG 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 2 cut(s) 166, 329
CviJI RGCY 8 cut(s) 13, 61, 104, 118, 129, 154, 224, 288
CviKI_1 RGCY 8 cut(s) 13, 61, 104, 118, 129, 154, 224, 288
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 169, 332
FaiI YATR 3 cut(s) 167, 323, 330
FatI CATG 2 cut(s) 165, 328
FriOI GRGCYC 1 cut(s) 131
HapII CCGG 2 cut(s) 47, 64
Hin1II CATG 2 cut(s) 169, 332
HindIII AAGCTT 1 cut(s) 11
HpaII CCGG 2 cut(s) 47, 64
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 18, 186
Hpy188III TCNNGA 3 cut(s) 64, 94, 139
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 285
Hsp92II CATG 2 cut(s) 169, 332
Kpn2I TCCGGA 1 cut(s) 63
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 9 cut(s) 12, 60, 62, 68, 77, 140, 186, 296, 302
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 106, 188
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 2 cut(s) 94, 208
MroI TCCGGA 1 cut(s) 63
MseI TTAA 1 cut(s) 216
MspI CCGG 2 cut(s) 47, 64
MwoI GCNNNNNNNGC 2 cut(s) 79, 285
NcoI CCATGG 1 cut(s) 165
NlaIII CATG 2 cut(s) 169, 332
NlaIV GGNNCC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 216
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 15, 31, 63, 81, 306
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 106, 188
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 106, 188
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 49
XapI RAATTY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.