Rh6BG388300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000500
Physical Location & Seq
Forward (+)
61692725 .. 61693054
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG388300.1

Sequence Viewer

Length: 330 bp
ATGGCAGCAGAGAAAGCAATGAAGAAGAGCCACTCAAGCAGTAATTATAAGGGATCGGTGGTCTTGAGCAACACCAACGCGACAAGAATTACATGGTCGAAACCAGACATTGCGAGTGTAGTTCCGGCTAAGAGGAGGTCAGTGAAGCGAATGATATTTGATGACATGGTGAAATCTGTATCCTCTCTTGTGTTTTATTGCTGTTCCTCTTCGTCGTCATCCTCTGCAGACCCTGAAGATGAGCTGTCCAACTCCTACGAGGCTACCTGCAGAAGCAAAAATGCCAAGAAGAACAGCACCAAATTTCCAGACCCATCTCAGCTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.92

Weight (kDa)

9.51

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 275
AccII CGCG 1 cut(s) 80
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 255
AluBI AGCT 2 cut(s) 244, 322
AluI AGCT 2 cut(s) 244, 322
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 181
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 322
BciVI GTATCC 1 cut(s) 190
BfmI CTRYAG 2 cut(s) 225, 268
BfuAI ACCTGC 1 cut(s) 275
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BpuEI CTTGAG 2 cut(s) 19, 85
Bse3DI GCAATG 2 cut(s) 24, 108
BseGI GGATG 1 cut(s) 218
BseMI GCAATG 2 cut(s) 24, 108
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 53
BspFNI CGCG 1 cut(s) 80
BspMAI CTGCAG 2 cut(s) 229, 272
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 24, 108
BssMI GATC 1 cut(s) 53
Bst6I CTCTTC 2 cut(s) 20, 214
BstDEI CTNAG 2 cut(s) 129, 318
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 14, 36
BstSFI CTRYAG 2 cut(s) 225, 268
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 17
BsuI GTATCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 275
CaiI CAGNNNCTG 1 cut(s) 233
CviAII CATG 2 cut(s) 93, 166
CviJI RGCY 5 cut(s) 30, 128, 244, 263, 322
CviKI_1 RGCY 5 cut(s) 30, 128, 244, 263, 322
DdeI CTNAG 2 cut(s) 129, 318
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 20, 214
EarI CTCTTC 2 cut(s) 20, 214
Eco57I CTGAAG 1 cut(s) 255
FaeI CATG 2 cut(s) 96, 169
FaiI YATR 3 cut(s) 48, 94, 167
FatI CATG 2 cut(s) 92, 165
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 96, 169
HpaII CCGG 1 cut(s) 125
HphI GGTGA 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 64, 308
Hpy99I CGWCG 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 227, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 36
HpyF3I CTNAG 2 cut(s) 129, 318
Hsp92II CATG 2 cut(s) 96, 169
Kzo9I GATC 1 cut(s) 53
LguI GCTCTTC 1 cut(s) 20
LpnPI CCDG 5 cut(s) 117, 138, 246, 280, 321
Lsp1109I GCAGC 1 cut(s) 17
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 5 cut(s) 34, 37, 201, 248, 301
MluCI AATT 4 cut(s) 43, 87, 302, 325
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 126, 129, 193, 217, 232, 253
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 14, 36
NdeII GATC 1 cut(s) 53
NlaIII CATG 2 cut(s) 96, 169
PciSI GCTCTTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 7
PsiI TTATAA 1 cut(s) 48
PstI CTGCAG 2 cut(s) 229, 272
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 20
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 53
SetI ASST 4 cut(s) 140, 246, 269, 324
SfcI CTRYAG 2 cut(s) 225, 268
SmlI CTYRAG 2 cut(s) 34, 64
SmoI CTYRAG 2 cut(s) 34, 64
Sse9I AATT 4 cut(s) 43, 87, 302, 325
TaqI TCGA 1 cut(s) 98
TasI AATT 4 cut(s) 43, 87, 302, 325
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 1 cut(s) 147
XapI RAATTY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.