pycom10g14500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000500
Physical Location & Seq
Reverse (-)
17885847 .. 17886035
189 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14500.1

Sequence Viewer

Length: 189 bp
ATGTTCAAACCGAAAACCGGGAGCGTTTTCCCTGTGAAGAAAAGGTTAGTAAAAAGAATGATGCTTGATCAAATTGTGCAATGTTTTTGGTCTGTTGCAGAAACTTCTGCTGGTGTTGGAGCCTCTGAAACCTCAAATGCCAAGAAAATCGTCAGCAGCCACGTTTACCTAGCCCACCATAGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.86

Weight (kDa)

10.01

Isoelectric Point (pI)

15.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 19
BbvI GCAGC 1 cut(s) 168
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 1 cut(s) 19
BfaI CTAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 17
Bsp143I GATC 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 86
BssMI GATC 1 cut(s) 67
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 168
CviJI RGCY 3 cut(s) 122, 159, 173
CviKI_1 RGCY 3 cut(s) 122, 159, 173
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
FaiI YATR 3 cut(s) 180, 185, 187
FauNDI CATATG 1 cut(s) 185
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 157
HapII CCGG 1 cut(s) 18
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 79, 98
HpySE526I ACGT 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 2 cut(s) 21, 119
LpnPI CCDG 3 cut(s) 31, 45, 96
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 49
MluCI AATT 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 2 cut(s) 133, 142
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 19
NciI CCSGG 1 cut(s) 19
NdeI CATATG 1 cut(s) 185
NdeII GATC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 121
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 19
SetI ASST 4 cut(s) 47, 134, 165, 171
SfaNI GCATC 1 cut(s) 51
SgeI CNNG 8 cut(s) 30, 31, 44, 77, 123, 154, 173, 182
Sse9I AATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 17
TaiI ACGT 1 cut(s) 165
TasI AATT 1 cut(s) 72
TseI GCWGC 1 cut(s) 156
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.