Prupe.8G206000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000500
Physical Location & Seq
Reverse (-)
19311063 .. 19311329
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G206000.1

Sequence Viewer

Length: 267 bp
ATGAAGCTGAAGTTGAGCTCATCTCAAGATCAAAGCAAGGCTGAGCCATGTTTGTTCAAACCAAAAGCTGGGAGTGTCTTCCCAGTGAAGAAGAGGTTAGTGAAGAGGATGATATTTGATCAAATTGTCCAATGCTTTTGCTCTGTTTCCGATGATACTAATAGTCCTTCAGCTTCTGCTGGAGTCTCTGAAACCACCACATCATCAAACGCCAACAAGGTCATCATCAGCAGCCACGTTTACCCATGCCCACCAGCATTACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.46

Weight (kDa)

9.24

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AcuI CTGAAG 2 cut(s) 29, 153
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 4 cut(s) 7, 18, 68, 173
AluI AGCT 4 cut(s) 7, 18, 68, 173
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 190
AlwNI CAGNNNCTG 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 243
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 190
BisI GCNGC 1 cut(s) 232
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 28, 118
Bsp1720I GCTNAGC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 83
BssMI GATC 2 cut(s) 28, 118
Bst6I CTCTTC 2 cut(s) 86, 98
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 2 cut(s) 31, 121
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 28, 118
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 176
CviAII CATG 2 cut(s) 48, 246
CviJI RGCY 7 cut(s) 7, 18, 41, 46, 68, 173, 234
CviKI_1 RGCY 7 cut(s) 7, 18, 41, 46, 68, 173, 234
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 30, 120
DpnII GATC 2 cut(s) 28, 118
Eam1104I CTCTTC 2 cut(s) 86, 98
EarI CTCTTC 2 cut(s) 86, 98
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 29, 153
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 2 cut(s) 51, 249
FaiI YATR 3 cut(s) 49, 247, 265
FatI CATG 2 cut(s) 47, 245
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 201
Hin1II CATG 2 cut(s) 51, 249
HinfI GANTC 1 cut(s) 183
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 151, 190
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 51, 249
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 28, 118
LpnPI CCDG 3 cut(s) 54, 96, 165
Lsp1109I GCAGC 1 cut(s) 243
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 30, 120
MboI GATC 2 cut(s) 28, 118
MboII GAAGA 4 cut(s) 70, 100, 103, 115
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 2 cut(s) 87, 99
NdeII GATC 2 cut(s) 28, 118
NlaIII CATG 2 cut(s) 51, 249
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 20
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 2 cut(s) 28, 118
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 1 cut(s) 20
SetI ASST 7 cut(s) 9, 20, 70, 98, 175, 222, 240
SgeI CNNG 9 cut(s) 38, 49, 60, 81, 95, 192, 229, 248, 258
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 123
SstI GAGCTC 1 cut(s) 20
TaiI ACGT 1 cut(s) 240
TasI AATT 1 cut(s) 123
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.