Rh6AG379000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000500
Physical Location & Seq
Forward (+)
57717039 .. 57717699
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG379000.1

Sequence Viewer

Length: 363 bp
ATGGCGTCGGAGCTTCAGAAACGTGCCGGAGCGGAAATTGCAATAGATCTGCCACCGCCGCTGGTGGAAAAGCTCAATATGGAACCTAATAGCTCTCCCAAACCCACCAAGAAGAAAGGTGGTAGTCTGTTGCCGGCGAAGAGAAGGTTTGTCAAGACCATGGCATTTCTTTCCGTTGTTCAATTCTTTAGCTCAATCTTCTGTGCCCCCGGAGCCCCTGAACCCCGTTCAGCCCGTTCCACGCCACCAGAAATAATCCCACACGCCCAGATTTCCAAGCAGATCTTCCCAAAGCCGAGCCAGGATGAGGACTCCCGAAGTCCCAATGCATCGCCGGTAATTAACAAGCCCTACTTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

9.87

Isoelectric Point (pI)

85.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 3 cut(s) 32, 56, 59
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 4 cut(s) 13, 73, 93, 192
AluI AGCT 4 cut(s) 13, 73, 93, 192
AsuC2I CCSGG 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 1 cut(s) 210
BglII AGATCT 2 cut(s) 46, 282
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 210, 302
BmiI GGNNCC 2 cut(s) 84, 214
BmrFI CCNGG 2 cut(s) 210, 302
BmsI GCATC 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 159, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 2 cut(s) 133, 334
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 159, 208
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 208
BsiSI CCGG 4 cut(s) 27, 134, 210, 335
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 208, 217
Bsp143I GATC 2 cut(s) 46, 282
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 3 cut(s) 32, 56, 59
BspLI GGNNCC 2 cut(s) 84, 214
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 2 cut(s) 133, 334
BssAI RCCGGY 2 cut(s) 133, 334
BssECI CCNNGG 2 cut(s) 159, 208
BssMI GATC 2 cut(s) 46, 282
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 2 cut(s) 49, 285
BstMBI GATC 2 cut(s) 46, 282
BstMWI GCNNNNNNNGC 3 cut(s) 38, 58, 212
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 208, 300
BstSLI GKGCMC 1 cut(s) 208
BstX2I RGATCY 2 cut(s) 46, 282
BstYI RGATCY 2 cut(s) 46, 282
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 135
Cfr10I RCCGGY 2 cut(s) 133, 334
CviAII CATG 1 cut(s) 160
CviJI RGCY 9 cut(s) 13, 73, 93, 192, 215, 233, 295, 300, 349
CviKI_1 RGCY 9 cut(s) 13, 73, 93, 192, 215, 233, 295, 300, 349
DpnI GATC 2 cut(s) 48, 284
DpnII GATC 2 cut(s) 46, 282
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 80, 161
FalI AAGNNNNNCTT 3 cut(s) 269, 301, 338
FaqI GGGAC 1 cut(s) 306
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 4 cut(s) 27, 134, 210, 335
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 163
HinfI GANTC 1 cut(s) 311
HpaII CCGG 4 cut(s) 27, 134, 210, 335
Hpy188I TCNGA 2 cut(s) 10, 18
Hpy188III TCNNGA 2 cut(s) 154, 315
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 41, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 58, 212
HpySE526I ACGT 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 163
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 46, 282
LmnI GCTCC 3 cut(s) 10, 29, 212
LweI GCATC 1 cut(s) 338
MaeII ACGT 1 cut(s) 22
MalI GATC 2 cut(s) 48, 284
MbiI CCGCTC 1 cut(s) 32
MboI GATC 2 cut(s) 46, 282
MboII GAAGA 4 cut(s) 124, 151, 190, 277
MflI RGATCY 2 cut(s) 46, 282
MhlI GDGCHC 2 cut(s) 208, 217
MluCI AATT 3 cut(s) 36, 182, 339
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 1 cut(s) 301
Mph1103I ATGCAT 1 cut(s) 331
MroNI GCCGGC 1 cut(s) 133
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 4 cut(s) 27, 134, 210, 335
MspR9I CCNGG 2 cut(s) 210, 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 38, 58, 212
NaeI GCCGGC 1 cut(s) 135
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 159
NdeII GATC 2 cut(s) 46, 282
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 84, 214
NmeAIII GCCGAG 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 331
PdiI GCCGGC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 84, 214
PsuI RGATCY 2 cut(s) 46, 282
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 46, 282
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 210, 302
SduI GDGCHC 2 cut(s) 208, 217
SetI ASST 9 cut(s) 15, 25, 75, 88, 95, 121, 149, 194, 362
SfaNI GCATC 1 cut(s) 338
Sse9I AATT 3 cut(s) 36, 182, 339
SsiI CCGC 3 cut(s) 32, 56, 59
StyD4I CCNGG 2 cut(s) 208, 300
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 25
TasI AATT 3 cut(s) 36, 182, 339
TauI GCSGC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.