Rh6AG379200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000500
Physical Location & Seq
Forward (+)
57765285 .. 57765641
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG379200.1

Sequence Viewer

Length: 357 bp
ATGGAGATGGTGTCGAAGAAGCTTGAGAACCCTGCAGGTGCGGCAATTCTTTGGTCCGAGACAGACCCAGAGCCGGTGGGCAAGCTCGAGGCGACGGAGAATAATTGGCGCAAGCCCAAGAAGGGCAGTGTTTTCCCGGTGAAGAGGAGGCTGGTGAAGACCATGGCGTTTGATTCCATTGTGAAATTCATTGCCTCTGTTTTCTCTTCCTTTAAAGTACCCAATCCCATGATCTCTCTTCCTCCACCCAAAATCCCAAAATCCAAAATATGCAACCACACTCAGATATACCCATATCCAAACCCAGACCATGTTGGCAAGCTAGCTCACAATGAATCGTCGGTAACAAGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

9.68

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 26
AciI CCGC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 73, 122
AluBI AGCT 4 cut(s) 22, 85, 322, 326
AluI AGCT 4 cut(s) 22, 85, 322, 326
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 86
ApoI RAATTY 1 cut(s) 185
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 151, 166
AsuNHI GCTAGC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 122
Bse118I RCCGGY 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 73, 122
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 74, 137
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 73, 122
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 86
Bsp143I GATC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 26
BspOI GCTAGC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 162
Bst6I CTCTTC 3 cut(s) 137, 211, 243
BstC8I GCNNGC 4 cut(s) 83, 113, 320, 324
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 4 cut(s) 83, 113, 320, 324
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 218
CviAII CATG 3 cut(s) 163, 229, 311
CviJI RGCY 7 cut(s) 22, 73, 85, 115, 151, 322, 326
CviKI_1 RGCY 7 cut(s) 22, 73, 85, 115, 151, 322, 326
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
DraI TTTAAA 1 cut(s) 214
Eam1104I CTCTTC 3 cut(s) 137, 211, 243
EarI CTCTTC 3 cut(s) 137, 211, 243
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 166, 232, 314
FaiI YATR 6 cut(s) 164, 230, 271, 289, 295, 312
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 162, 228, 310
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 42
HapII CCGG 2 cut(s) 74, 137
HhaI GCGC 1 cut(s) 111
Hin1II CATG 3 cut(s) 166, 232, 314
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 173, 335
HpaII CCGG 2 cut(s) 74, 137
HphI GGTGA 2 cut(s) 151, 166
Hpy188I TCNGA 2 cut(s) 58, 285
Hpy99I CGWCG 2 cut(s) 97, 343
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 35, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 3 cut(s) 166, 232, 314
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 7 cut(s) 21, 45, 81, 87, 137, 150, 318
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 5 cut(s) 28, 154, 169, 198, 230
MluCI AATT 3 cut(s) 45, 103, 185
MnlI CCTC 5 cut(s) 82, 138, 141, 205, 252
MseI TTAA 1 cut(s) 213
MspI CCGG 2 cut(s) 74, 137
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 162
NdeII GATC 1 cut(s) 231
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 3 cut(s) 166, 232, 314
PaeR7I CTCGAG 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 173, 335
PkrI GCNGC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 54
PspXI VCTCGAGB 1 cut(s) 86
PstI CTGCAG 1 cut(s) 37
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 54
SbfI CCTGCAGG 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 137
SdaI CCTGCAGG 1 cut(s) 37
SetI ASST 5 cut(s) 24, 40, 87, 324, 328
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 86
SinI GGWCC 1 cut(s) 54
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 23, 86
SmoI CTYRAG 2 cut(s) 23, 86
Sse8387I CCTGCAGG 1 cut(s) 37
Sse9I AATT 3 cut(s) 45, 103, 185
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 2 cut(s) 14, 87
TasI AATT 3 cut(s) 45, 103, 185
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 173, 335
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 178, 348
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.