Rh6BG388100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000500
Physical Location & Seq
Forward (+)
61629793 .. 61630101
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG388100.1

Sequence Viewer

Length: 309 bp
ATGGTGTCGAAGCTTCAGAACCGTGTGGGTGCGAAAGCTGTATGGGCCGTGATAGATCAGCCGCCACTGTTGGCGGCGATGGAGCCCAACAAGAAGAAGAAAGGTGGTAGTCTCAGTTTGGTGCCGGCAAAGAGAAGGCTGGTCAAGACCATGGTGTTTCTTTCCATTGTTGAATTCCTTGGCTCCATTTTCTGTGCCTCTGGATACACCGAAGCCAACTCCGGCAATTCCACGTCCAAAATCCCAAGTGCCAGCAATTCCAAGCAGATTATCCCAGAGCCGGACGGTTTGACGTCTCAGAATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.82

Weight (kDa)

9.93

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 2 cut(s) 62, 74
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 173
AjiI CACGTC 1 cut(s) 234
AluBI AGCT 2 cut(s) 13, 38
AluI AGCT 2 cut(s) 13, 38
Alw26I GTCTC 2 cut(s) 116, 300
AoxI GGCC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 87
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 32
BciVI GTATCC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 116, 300
BfuI GTATCC 1 cut(s) 197
BisI GCNGC 2 cut(s) 62, 75
BlsI GCNGC 2 cut(s) 63, 76
BmgBI CACGTC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 3 cut(s) 84, 123, 184
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 150, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 124
BseDI CCNNGG 2 cut(s) 150, 178
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 127
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 121
BsiSI CCGG 3 cut(s) 125, 222, 281
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 116, 300
BsmBI CGTCTC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 2 cut(s) 62, 74
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 84, 123, 184
BspT107I GGYRCC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 150, 178
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 293
BssT1I CCWWGG 2 cut(s) 150, 178
Bst4CI ACNGT 3 cut(s) 23, 69, 287
BstACI GRCGYC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 126, 253
BstDEI CTNAG 2 cut(s) 113, 297
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 116, 300
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 44
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 92
BtrI CACGTC 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 126, 253
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 45
CviAII CATG 1 cut(s) 151
CviJI RGCY 9 cut(s) 13, 38, 47, 61, 85, 139, 183, 215, 280
CviKI_1 RGCY 9 cut(s) 13, 38, 47, 61, 85, 139, 183, 215, 280
DdeI CTNAG 2 cut(s) 113, 297
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 150, 178
Eco24I GRGCYC 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 173
EcoT14I CCWWGG 2 cut(s) 150, 178
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 2 cut(s) 150, 178
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 1 cut(s) 154
FaiI YATR 3 cut(s) 43, 152, 307
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 62, 75
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 2 cut(s) 62, 75
GluI GCNGC 2 cut(s) 62, 75
HaeIII GGCC 1 cut(s) 47
HapII CCGG 3 cut(s) 125, 222, 281
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 11
HpaII CCGG 3 cut(s) 125, 222, 281
Hpy188I TCNGA 2 cut(s) 18, 300
Hpy188III TCNNGA 2 cut(s) 145, 201
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 3 cut(s) 23, 69, 287
HpyCH4IV ACGT 2 cut(s) 233, 293
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 113, 297
HpySE526I ACGT 2 cut(s) 233, 293
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 1 cut(s) 154
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 82, 188
LpnPI CCDG 7 cut(s) 125, 138, 186, 235, 265, 288, 294
MaeII ACGT 2 cut(s) 233, 293
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 106, 109
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 3 cut(s) 173, 226, 256
MnlI CCTC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 124
MspI CCGG 3 cut(s) 125, 222, 281
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 126
NcoI CCATGG 1 cut(s) 150
NdeII GATC 1 cut(s) 55
NgoMIV GCCGGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 3 cut(s) 84, 123, 184
NsiI ATGCAT 1 cut(s) 307
PctI GAATGC 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 63, 76
PspN4I GGNNCC 3 cut(s) 84, 123, 184
PspPI GGNCC 1 cut(s) 45
SatI GCNGC 2 cut(s) 62, 75
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 87
SetI ASST 5 cut(s) 15, 40, 106, 236, 296
Sse9I AATT 3 cut(s) 173, 226, 256
SsiI CCGC 2 cut(s) 62, 74
StyI CCWWGG 2 cut(s) 150, 178
TaaI ACNGT 3 cut(s) 23, 69, 287
TaiI ACGT 2 cut(s) 236, 296
TaqI TCGA 1 cut(s) 8
TasI AATT 3 cut(s) 173, 226, 256
TauI GCSGC 2 cut(s) 64, 77
TscAI CASTG 1 cut(s) 72
TspRI CASTG 1 cut(s) 72
XapI RAATTY 1 cut(s) 173
ZraI GACGTC 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.