FvH4_2g28100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22149876 .. 22150598
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28100.t1

Sequence Viewer

Length: 534 bp
ATGGCTTCGAAGCTTCGGAACCCTACAGGTGCGGAGGTTGTCTCGGCGGAGACAAACCCACAGGCGGTGGTGAAGCCCAAGACAGCGCCACAGGTGGTGGACAAGCTCTTGATCAAGACGGAGGCTTATTGTTTCAAGCCCAAGAAGGGCTCTGTTTTCCCGGCAAAAAGAAGGCTTGTGAAGACCATGGTGTTCCATTCCATTCTGAAATTCGTGGCCTCCGTTGGCCGTCCACCAAGGTTAGTAAGAGTGCCGGACTCCGGTCAAGACGGCCGGCCGGTCACCTATGAACCCATATATAGTATTCTTAAATATTCGTCATCCATGTATCCACCTACCTTCCTCGTCTCCCCTTGTCACCGACCTTTCCTGGTCTTGCCGGAATTTAATCAGACATATAAACTGAGCACATCAAAATCGACGTCGGATTCCGTCGGATCTTCACCTCCGACCGTCGTTATTCTAGCAGTTGTCGAGAAAAGGCCGGTGAGGAGGGGAGAAGATGAGCAGGGTGTTTTATCAATTATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.51

Weight (kDa)

10.01

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 425
AciI CCGC 3 cut(s) 32, 47, 65
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 3 cut(s) 226, 271, 275
AcsI RAATTY 2 cut(s) 209, 383
AcyI GRCGYC 1 cut(s) 422
AfiI CCNNNNNNNGG 3 cut(s) 64, 146, 260
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 2 cut(s) 13, 106
AluI AGCT 2 cut(s) 13, 106
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 3 cut(s) 44, 46, 352
AlwI GGATC 1 cut(s) 445
AoxI GGCC 5 cut(s) 216, 226, 271, 275, 482
ApoI RAATTY 2 cut(s) 209, 383
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 5 cut(s) 82, 274, 350, 435, 499
AsuII TTCGAA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 410
BceAI ACGGC 2 cut(s) 213, 286
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 1 cut(s) 339
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 3 cut(s) 44, 46, 352
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 89
BfuI GTATCC 1 cut(s) 339
Bme1390I CCNGG 2 cut(s) 161, 371
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 161, 371
BoxI GACNNNNGTC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 186, 236
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 146, 260
Bse118I RCCGGY 3 cut(s) 273, 277, 484
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 186, 236
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 3 cut(s) 64, 146, 260
BseMII CTCAG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 505
BseX3I CGGCCG 2 cut(s) 271, 275
Bsh1285I CGRYCG 3 cut(s) 274, 278, 453
BshFI GGCC 5 cut(s) 218, 228, 273, 277, 484
BsiEI CGRYCG 3 cut(s) 274, 278, 453
BsiHKAI GWGCWC 1 cut(s) 410
BsiSI CCGG 7 cut(s) 161, 254, 261, 274, 278, 380, 485
BslI CCNNNNNNNGG 3 cut(s) 64, 146, 260
BsmAI GTCTC 3 cut(s) 44, 46, 352
BsmBI CGTCTC 1 cut(s) 352
BsnI GGCC 5 cut(s) 218, 228, 273, 277, 484
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 152, 410
Bsp143I GATC 2 cut(s) 111, 437
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 32, 47, 65
BspANI GGCC 5 cut(s) 218, 228, 273, 277, 484
BspCNI CTCAG 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 445
BspT104I TTCGAA 1 cut(s) 8
BsrFI RCCGGY 3 cut(s) 273, 277, 484
BssAI RCCGGY 3 cut(s) 273, 277, 484
BssECI CCNNGG 2 cut(s) 186, 236
BssMI GATC 2 cut(s) 111, 437
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 2 cut(s) 186, 236
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 454
BstACI GRCGYC 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 1 cut(s) 320
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 114, 440
BstMAI GTCTC 3 cut(s) 44, 46, 352
BstMBI GATC 2 cut(s) 111, 437
BstMCI CGRYCG 3 cut(s) 274, 278, 453
BstNI CCWGG 1 cut(s) 371
BstPAI GACNNNNGTC 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 159, 369
BstSFI CTRYAG 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BstZI CGGCCG 2 cut(s) 271, 275
BsuI GTATCC 1 cut(s) 339
BsuRI GGCC 5 cut(s) 218, 228, 273, 277, 484
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 3 cut(s) 273, 277, 484
CviAII CATG 2 cut(s) 187, 325
DdeI CTNAG 1 cut(s) 404
DpnI GATC 2 cut(s) 113, 439
DpnII GATC 2 cut(s) 111, 437
EaeI YGGCCR 3 cut(s) 226, 271, 275
EagI CGGCCG 2 cut(s) 271, 275
EciI GGCGGA 1 cut(s) 62
EclXI CGGCCG 2 cut(s) 271, 275
Eco130I CCWWGG 2 cut(s) 186, 236
Eco24I GRGCYC 1 cut(s) 152
Eco52I CGGCCG 2 cut(s) 271, 275
Eco91I GGTNACC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 2 cut(s) 186, 236
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 2 cut(s) 186, 236
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 2 cut(s) 190, 328
FaiI YATR 8 cut(s) 188, 288, 296, 298, 300, 326, 397, 399
FatI CATG 2 cut(s) 186, 324
FbaI TGATCA 1 cut(s) 111
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 152
FseI GGCCGGCC 1 cut(s) 277
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 5 cut(s) 218, 228, 273, 277, 484
HapII CCGG 7 cut(s) 161, 254, 261, 274, 278, 380, 485
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 2 cut(s) 190, 328
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 257, 428
HpaII CCGG 7 cut(s) 161, 254, 261, 274, 278, 380, 485
HphI GGTGA 5 cut(s) 82, 274, 350, 435, 499
Hpy166II GTNNAC 2 cut(s) 100, 233
Hpy188I TCNGA 6 cut(s) 18, 207, 393, 427, 437, 450
Hpy188III TCNNGA 4 cut(s) 109, 115, 266, 475
Hpy8I GTNNAC 2 cut(s) 100, 233
Hpy99I CGWCG 4 cut(s) 424, 427, 437, 458
HpyAV CCTTC 3 cut(s) 139, 165, 349
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 1 cut(s) 422
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 1 cut(s) 422
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 2 cut(s) 190, 328
HspAI GCGC 1 cut(s) 86
KroI GCCGGC 1 cut(s) 273
KroNI GCCGGC 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 2 cut(s) 111, 437
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 2 cut(s) 280, 356
MalI GATC 2 cut(s) 113, 439
MboI GATC 2 cut(s) 111, 437
MboII GAAGA 3 cut(s) 193, 432, 512
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 2 cut(s) 152, 410
MluCI AATT 3 cut(s) 209, 383, 522
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 3 cut(s) 405, 415, 473
MnlI CCTC 7 cut(s) 28, 115, 229, 353, 456, 483, 486
MroNI GCCGGC 1 cut(s) 273
MseI TTAA 2 cut(s) 309, 387
MspI CCGG 7 cut(s) 161, 254, 261, 274, 278, 380, 485
MspR9I CCNGG 2 cut(s) 161, 371
MvaI CCWGG 1 cut(s) 371
NaeI GCCGGC 1 cut(s) 275
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 186
NdeII GATC 2 cut(s) 111, 437
NgoMIV GCCGGC 1 cut(s) 273
NlaIII CATG 2 cut(s) 190, 328
NlaIV GGNNCC 1 cut(s) 20
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 2 cut(s) 280, 356
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 428
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PshAI GACNNNNGTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 437
RigI GGCCGGCC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 309, 387
Sau3AI GATC 2 cut(s) 111, 437
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 161, 371
SduI GDGCHC 2 cut(s) 152, 410
SfcI CTRYAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 8
Sse9I AATT 3 cut(s) 209, 383, 522
SsiI CCGC 3 cut(s) 32, 47, 65
SspI AATATT 1 cut(s) 314
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 2 cut(s) 159, 369
StyI CCWWGG 2 cut(s) 186, 236
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 1 cut(s) 425
TaqI TCGA 3 cut(s) 8, 419, 474
TasI AATT 3 cut(s) 209, 383, 522
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 309, 387
Tru9I TTAA 2 cut(s) 309, 387
TseFI GTSAC 2 cut(s) 280, 356
Tsp45I GTSAC 2 cut(s) 280, 356
TspDTI ATGAA 1 cut(s) 303
TspGWI ACGGA 3 cut(s) 134, 211, 421
XapI RAATTY 2 cut(s) 209, 383
XspI CTAG 1 cut(s) 464
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.