Rroxscaffold_7G00170890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000500
Physical Location & Seq
Reverse (-)
11301666 .. 11302562
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170890.1

Sequence Viewer

Length: 168 bp
ATGGTGTTCCATTCCATTCTGAAATTCGTTGCCTCTGGTTTCTGTTCCATTAAAGAAGCCAATCCCATCTCACTTTCACACCCCAAAATCCCAAATGCTAAAAAATGCAACCAGAGCCGGATATTCCCCAACCTTGATGAACAGTTGGTCATACATCATGGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.13

Weight (kDa)

9.24

Isoelectric Point (pI)

24.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 23
ApoI RAATTY 1 cut(s) 23
BccI CCATC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 114
CviAII CATG 1 cut(s) 158
CviJI RGCY 2 cut(s) 59, 117
CviKI_1 RGCY 2 cut(s) 59, 117
FaeI CATG 1 cut(s) 161
FaiI YATR 2 cut(s) 152, 159
FatI CATG 1 cut(s) 157
HapII CCGG 1 cut(s) 118
Hin1II CATG 1 cut(s) 161
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 161
LpnPI CCDG 3 cut(s) 21, 125, 131
MluCI AATT 1 cut(s) 23
MnlI CCTC 1 cut(s) 43
MseI TTAA 1 cut(s) 51
MspI CCGG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 114
NlaIII CATG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 51
SetI ASST 1 cut(s) 135
SgeI CNNG 4 cut(s) 48, 124, 130, 146
Sse9I AATT 1 cut(s) 23
TaaI ACNGT 1 cut(s) 144
TasI AATT 1 cut(s) 23
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 153
XapI RAATTY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.