RchiOBHm_Chr6g0297041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000500
Physical Location & Seq
Forward (+)
58683532 .. 58684498
967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26663

Sequence Viewer

Length: 357 bp
ATGGAGATGGTGTCGAAGAAGCTTGAGGACCCTGCAGGTGCGGCAATTCTCTGGTCCTTGACAGACCCAAAGCCGGTGGGCAAACTCGAGGCGACGAAGGCTAATTGGTGCAAGCCCAAGAAGGGCACTGTTTTCCCGGTGAAGAGGAGGCTGGTGAAGACCATGATGTTTGATTCCATTGTGAAATTCGTTGCCTCTGTTTTCTCTTCCTCTAAAGTACCCAATCCCATGATCTCTCTTTCTGCACCCAAAATTCCAAAAGCCAAAATATGCAACCACACTCGGACATACCCACATCCAAGCCCAGACCATGTTGGCAAGCTAGCTCACAATGAGTCGTCGGTAACGAGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.94

Weight (kDa)

9.97

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 26
AciI CCGC 1 cut(s) 41
AcsI RAATTY 2 cut(s) 185, 252
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 73, 122
AluBI AGCT 3 cut(s) 22, 322, 326
AluI AGCT 3 cut(s) 22, 322, 326
Ama87I CYCGRG 1 cut(s) 86
ApoI RAATTY 2 cut(s) 185, 252
AspS9I GGNCC 2 cut(s) 28, 54
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 151, 166
AsuNHI GCTAGC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 2 cut(s) 28, 54
BaeGI GKGCMC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 137
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 2 cut(s) 28, 54
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 28, 54
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 137
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 122
Bse118I RCCGGY 1 cut(s) 73
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 2 cut(s) 73, 122
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 74, 137
BslI CCNNNNNNNGG 2 cut(s) 73, 122
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 26
BspOI GCTAGC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssMI GATC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 137, 211
BstC8I GCNNGC 3 cut(s) 113, 320, 324
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 41, 98
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 3 cut(s) 113, 320, 324
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 28, 54
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 3 cut(s) 163, 229, 311
CviJI RGCY 9 cut(s) 22, 73, 101, 115, 151, 263, 303, 322, 326
CviKI_1 RGCY 9 cut(s) 22, 73, 101, 115, 151, 263, 303, 322, 326
CviQI GTAC 1 cut(s) 218
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eam1104I CTCTTC 2 cut(s) 137, 211
EarI CTCTTC 2 cut(s) 137, 211
Eco47I GGWCC 2 cut(s) 28, 54
Eco88I CYCGRG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 28
FaeI CATG 3 cut(s) 166, 232, 314
FaiI YATR 5 cut(s) 164, 230, 271, 289, 312
FatI CATG 3 cut(s) 162, 228, 310
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 42
HapII CCGG 2 cut(s) 74, 137
Hin1II CATG 3 cut(s) 166, 232, 314
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 173, 335, 349
HpaII CCGG 2 cut(s) 74, 137
HphI GGTGA 2 cut(s) 151, 166
Hpy188I TCNGA 2 cut(s) 285, 356
Hpy99I CGWCG 2 cut(s) 97, 343
HpyAV CCTTC 2 cut(s) 91, 115
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 35, 111, 245, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 98
Hsp92II CATG 3 cut(s) 166, 232, 314
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 7 cut(s) 21, 37, 45, 87, 137, 150, 318
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 4 cut(s) 28, 154, 169, 198
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 4 cut(s) 45, 103, 185, 252
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 6 cut(s) 19, 82, 138, 141, 205, 220
MspI CCGG 2 cut(s) 74, 137
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 41, 98
NciI CCSGG 1 cut(s) 137
NdeII GATC 1 cut(s) 231
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 3 cut(s) 166, 232, 314
NlaIV GGNNCC 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 28, 54
PspPPI RGGWCCY 1 cut(s) 28
PspXI VCTCGAGB 1 cut(s) 86
PstI CTGCAG 1 cut(s) 37
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 2 cut(s) 28, 54
SbfI CCTGCAGG 1 cut(s) 37
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 137
SdaI CCTGCAGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 128
SetI ASST 4 cut(s) 24, 40, 324, 328
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 86
SinI GGWCC 2 cut(s) 28, 54
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 23, 86
SmoI CTYRAG 2 cut(s) 23, 86
Sse8387I CCTGCAGG 1 cut(s) 37
Sse9I AATT 4 cut(s) 45, 103, 185, 252
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 14, 87
TasI AATT 4 cut(s) 45, 103, 185, 252
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 28, 54
XapI RAATTY 2 cut(s) 185, 252
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.