Rroxscaffold_7G00170880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000500
Physical Location & Seq
Reverse (-)
11280678 .. 11281696
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170880.1

Sequence Viewer

Length: 267 bp
ATGGGGGTGAAGTTGCAGAAGAACAATGGAGGAGACCAAACTGTCTGGGCCGAGACAGAGCCACATCTGGCGGCCAAACCCAAGCCTATGCCGAAGAAGGAGGGCAGTGTGTTTCCGGCGAAGAGGAGGTTGGTGAAGACCATGGCTTTCACTTCCATTCTCCACTTCTTTGTCTTTCTTTGCTCCTCTGCTGGAGGAGGAACCGCCACACCCAAATCCCCAAATGGCAAGAAGTCCAAGCAGATAGTCCCAGACCCTAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.48

Weight (kDa)

10.21

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AciI CCGC 2 cut(s) 71, 204
AcoI YGGCCR 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw26I GTCTC 2 cut(s) 27, 47
AoxI GGCC 2 cut(s) 48, 72
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 19, 145
BbsI GAAGAC 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 27, 47
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 141
BseRI GAGGAG 4 cut(s) 45, 139, 175, 210
BshFI GGCC 2 cut(s) 50, 74
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 27, 47
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 2 cut(s) 50, 74
Bso31I GGTCTC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 2 cut(s) 71, 204
BspANI GGCC 2 cut(s) 50, 74
BspLI GGNNCC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 27, 47
BstV2I GAAGAC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 50, 74
BtgI CCRYGG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 2 cut(s) 142, 264
CviJI RGCY 5 cut(s) 50, 61, 74, 85, 146
CviKI_1 RGCY 5 cut(s) 50, 61, 74, 85, 146
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 145, 267
FaiI YATR 3 cut(s) 89, 143, 265
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 141, 263
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 50, 74
HapII CCGG 1 cut(s) 116
Hin1II CATG 2 cut(s) 145, 267
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 19, 145
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 16
Hsp92II CATG 2 cut(s) 145, 267
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 31, 53, 129, 177
MboII GAAGA 4 cut(s) 31, 106, 133, 148
MnlI CCTC 7 cut(s) 23, 94, 117, 120, 188, 191, 196
MspI CCGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 141
NlaIII CATG 2 cut(s) 145, 267
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 48
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 48
SetI ASST 1 cut(s) 131
SsiI CCGC 2 cut(s) 71, 204
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 43
TauI GCSGC 1 cut(s) 74
TscAI CASTG 1 cut(s) 112
TspRI CASTG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.