Rh6AG379300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000500
Physical Location & Seq
Reverse (-)
57791558 .. 57791920
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG379300.1

Sequence Viewer

Length: 363 bp
ATGGCGTCAGAGGTTCAGAAAAGTGCCGGAGCGGAAATTGCGACAGATCTGCCACCGCCGCGGGTGGAAAAGCCCAATATGGAACCTAATAGCTCTCTCAAACCCACCAAGAGGAAAGGTGGTAGTCTGTTGCTGGCGAAGAGAAGGTTAGTCAAGACCATGGCATTTCTTTCCGTTGTTCAATTCTTCAGCTCAATCTTCTGTGCCCCCGGAACCCCTGAACCCCGTTCAGCCAGTTCCACGCCACCCGAAAAAATCCCACACTCCAAGATCTCCAAGCAGATTTTCCCAGAGCGGAGCCAGGATGAGAACTGCCAAAGTCCCAATCCATCGCCAGTAATTAACAAGCCCTACTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.11

Weight (kDa)

9.74

Isoelectric Point (pI)

67.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 32, 295
AccII CGCG 1 cut(s) 61
AciI CCGC 5 cut(s) 32, 56, 59, 61, 295
AcuI CTGAAG 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 2 cut(s) 93, 192
AluI AGCT 2 cut(s) 93, 192
AsuC2I CCSGG 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 208
BccI CCATC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 1 cut(s) 210
BglII AGATCT 2 cut(s) 46, 270
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 210, 302
BmiI GGNNCC 3 cut(s) 84, 214, 299
BmrFI CCNGG 2 cut(s) 210, 302
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 59, 159, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 234, 335
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 59, 159, 208
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 234, 335
BseSI GKGCMC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 27, 210
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 2 cut(s) 46, 270
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 5 cut(s) 32, 56, 59, 61, 295
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 84, 214, 299
BsrBI CCGCTC 2 cut(s) 32, 295
BsrI ACTGG 2 cut(s) 234, 335
BssECI CCNNGG 3 cut(s) 59, 159, 208
BssMI GATC 2 cut(s) 46, 270
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 135
BstDSI CCRYGG 2 cut(s) 59, 159
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 2 cut(s) 49, 273
BstMBI GATC 2 cut(s) 46, 270
BstMWI GCNNNNNNNGC 2 cut(s) 38, 58
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 208, 300
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 46, 270
BstYI RGATCY 2 cut(s) 46, 270
BtgI CCRYGG 2 cut(s) 59, 159
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 135
Cfr42I CCGCGG 1 cut(s) 62
CviAII CATG 1 cut(s) 160
CviJI RGCY 6 cut(s) 73, 93, 192, 233, 300, 349
CviKI_1 RGCY 6 cut(s) 73, 93, 192, 233, 300, 349
DpnI GATC 2 cut(s) 48, 272
DpnII GATC 2 cut(s) 46, 270
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 80, 161
FalI AAGNNNNNCTT 1 cut(s) 338
FaqI GGGAC 1 cut(s) 306
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 2 cut(s) 27, 210
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 163
HpaII CCGG 2 cut(s) 27, 210
Hpy188I TCNGA 2 cut(s) 10, 18
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 58
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 163
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 46, 270
LmnI GCTCC 2 cut(s) 29, 297
LpnPI CCDG 9 cut(s) 40, 119, 223, 231, 247, 287, 303, 314, 348
MalI GATC 2 cut(s) 48, 272
MbiI CCGCTC 2 cut(s) 32, 295
MboI GATC 2 cut(s) 46, 270
MboII GAAGA 3 cut(s) 151, 178, 190
MflI RGATCY 2 cut(s) 46, 270
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 36, 182, 339
MnlI CCTC 2 cut(s) 4, 105
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 2 cut(s) 27, 210
MspR9I CCNGG 2 cut(s) 210, 302
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 38, 58
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 159
NdeII GATC 2 cut(s) 46, 270
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 3 cut(s) 84, 214, 299
PkrI GCNGC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 84, 214, 299
PsuI RGATCY 2 cut(s) 46, 270
SacII CCGCGG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 46, 270
ScrFI CCNGG 2 cut(s) 210, 302
SduI GDGCHC 1 cut(s) 208
SetI ASST 6 cut(s) 15, 88, 95, 121, 149, 194
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
Sse9I AATT 3 cut(s) 36, 182, 339
SsiI CCGC 5 cut(s) 32, 56, 59, 61, 295
StyD4I CCNGG 2 cut(s) 208, 300
StyI CCWWGG 1 cut(s) 159
TasI AATT 3 cut(s) 36, 182, 339
TauI GCSGC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.